CE Algorithm, version 1.00, 1998.

Chain 1: pdb3do9.ent:C (Size=188) 
Chain 2: pdb1nyq.ent:A (Size=645)

Alignment length = 69 Rmsd = 4.51A Z-Score = 3.7 Gaps = 28(40.6%) CPU = 29s Sequence identities = 5.8%

Chain 1:   19 FLNNYQLKQRECVWILNYLMSHDQLMHKVHF-------VEHAKYC---PRGLVMSANCVKDTP-----FH
Chain 2:  555 VDLHYDY----ARQLQDELKSQGVRV--SIDDRNEKMGYKIREAQMQKIPYQIVVGD----KEVENNQVN

Chain 1:   74 FFKQN--VMTTDA-EKSFHDIRLNRDE
Chain 2:  615 VRQYGSQDQETVEKDEFIWNLVDEIRL

     X2 = ( 0.941430)*X1 + ( 0.315335)*Y1 + ( 0.119470)*Z1 + (  -21.056358)
     Y2 = (-0.111175)*X1 + (-0.044233)*Y1 + ( 0.992816)*Z1 + (  -40.514980)
     Z2 = ( 0.318354)*X1 + (-0.947949)*Y1 + (-0.006585)*Z1 + (  154.308145)