CE Algorithm, version 1.00, 1998.

Chain 1: pdb3do9.ent:C (Size=188) 
Chain 2: pdb1u4q.ent:A (Size=322)

Alignment length = 57 Rmsd = 6.32A Z-Score = 3.7 Gaps = 5(8.8%) CPU = 9s Sequence identities = 4.8%

Chain 1:  105 FKSSFQNANYVAVLEENPYLPKHIEVNEKDRLLAERFLEESVFSFRRERLLKQIDEALDKQDKEAFH
Chain 2:  230 WINEKMTLVASEDYGDTLAA-----IQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVEN

     X2 = (-0.841766)*X1 + ( 0.354088)*Y1 + (-0.407496)*Z1 + (  154.550076)
     Y2 = ( 0.176729)*X1 + (-0.532497)*Y1 + (-0.827776)*Z1 + (   21.346421)
     Z2 = (-0.510096)*X1 + (-0.768810)*Y1 + ( 0.385660)*Z1 + (  196.005711)