CE Algorithm, version 1.00, 1998.

Chain 1: pdb3do9.ent:C (Size=188) 
Chain 2: pdb2q40.ent:A (Size=367)

Alignment length = 79 Rmsd = 4.62A Z-Score = 3.7 Gaps = 36(45.6%) CPU = 9s Sequence identities = 3.8%

Chain 1:    9 VNEKKDFVKWFLNNYQLKQRECVWILNYLMSHDQLMHKVHFVEHAKYCPRGLVMSANCVK---DTPFHFF
Chain 2:  211 SWKKAVIF------VDNSGADIILGILPFARELLRRGAQVV----------LAANELPSINDITCTELT-

Chain 1:   76 KQNVMTTDAEKSFH----DIRLNRDEDIYIQLN-----FKSSFQN
Chain 2:  264 -------EILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRV

     X2 = ( 0.806541)*X1 + (-0.298196)*Y1 + (-0.510461)*Z1 + (   68.065205)
     Y2 = ( 0.413762)*X1 + ( 0.901462)*Y1 + ( 0.127148)*Z1 + (  -33.824341)
     Z2 = (-0.422246)*X1 + ( 0.313760)*Y1 + (-0.850449)*Z1 + (  157.796386)