CE Algorithm, version 1.00, 1998.

Chain 1: pdb3do9.ent:C (Size=188) 
Chain 2: pdb1nj1.ent:A (Size=501)

Alignment length = 69 Rmsd = 4.56A Z-Score = 3.7 Gaps = 25(36.2%) CPU = 14s Sequence identities = 7.2%

Chain 1:   22 NYQLKQRECVWILNYLMSHDQLMHKVHF-------VEHAKYC----PRGLVMSANCVKDTP----FHFFK
Chain 2:  328 AEEVMEA-CRELRSRLEAAGFRV--HLDDRDIRAGRKYYEWEMRGVPLRVEIGP----RDLEKGAAVISR

Chain 1:   77 --QNVMTTDA-EKSFHDIRLNRDE
Chain 2:  391 RDTGEKVTADLQGIEETLRELMKD

     X2 = ( 0.548318)*X1 + ( 0.734722)*Y1 + ( 0.399414)*Z1 + (   97.300117)
     Y2 = (-0.836191)*X1 + ( 0.488263)*Y1 + ( 0.249768)*Z1 + (   32.740713)
     Z2 = (-0.011509)*X1 + (-0.470939)*Y1 + ( 0.882091)*Z1 + (  106.224487)