CE Algorithm, version 1.00, 1998.

Chain 1: pdb3do9.ent:B (Size=188) 
Chain 2: pdb2jx0.ent:A (Size=135)

Alignment length = 63 Rmsd = 3.18A Z-Score = 4.1 Gaps = 17(27.0%) CPU = 2s Sequence identities = 6.2%

Chain 1:  106 KSSFQNANYVAVLEENPYLPKHIEVNEKDRLLAERFLEESVFSFRRERLLKQIDEALDKQ-DKEAFHRLT
Chain 2:   55 AVTEMASLFPKRP--------------ALEPVRSSLRLLNASAYRLQSECRKT--VPPEPGAPVDFQLLT

Chain 1:  175 AELKMLEGHHH
Chain 2:  109 QQVIQCAYDIA

     X2 = ( 0.317656)*X1 + ( 0.913977)*Y1 + (-0.252469)*Z1 + (   63.721054)
     Y2 = ( 0.435816)*X1 + (-0.377200)*Y1 + (-0.817181)*Z1 + (   56.711075)
     Z2 = (-0.842116)*X1 + ( 0.149552)*Y1 + (-0.518146)*Z1 + (   71.008058)