CE Algorithm, version 1.00, 1998.

Chain 1: pdb3do9.ent:B (Size=188) 
Chain 2: pdb2qyw.ent:A (Size=102)

Alignment length = 66 Rmsd = 5.84A Z-Score = 4.2 Gaps = 12(18.2%) CPU = 1s Sequence identities = 10.3%

Chain 1:  106 KSSFQNANYVAVLEENPYLPKHIEVNEKDRLLAERFLEESVFSFRRERLLKQIDEALDKQDKEAFHRLTA
Chain 2:   28 LEDLQG--VPERLLGTA-------GTEEKKKLVRDFDEKQQEANETLAEXEEELRYA---PLTFRNPXXS

Chain 1:  176 ELKMLEGHHH
Chain 2:   86 KLRNYRKDLA

     X2 = ( 0.430829)*X1 + (-0.900039)*Y1 + ( 0.065694)*Z1 + (   63.892818)
     Y2 = (-0.839440)*X1 + (-0.426413)*Y1 + (-0.336915)*Z1 + (   66.081135)
     Z2 = (-0.331250)*X1 + (-0.090007)*Y1 + ( 0.939240)*Z1 + (   71.558487)