CE Algorithm, version 1.00, 1998.

Chain 1: pdb3do9.ent:B (Size=188) 
Chain 2: pdb1u4q.ent:A (Size=322)

Alignment length = 66 Rmsd = 5.84A Z-Score = 4.1 Gaps = 15(22.7%) CPU = 7s Sequence identities = 5.7%

Chain 1:  106 KSSFQNANYVAVL----EENPYLPKHIEVNE-KDRLLAERFLEESVFSFRRERLLKQIDEALDKQDKEAF
Chain 2:  231 INEKMT------LVASEDYGDT----LAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE

Chain 1:  171 HRLTAELKMLEGHHH
Chain 2:  291 NITAKMKGLKGKVSD

     X2 = ( 0.118579)*X1 + (-0.619344)*Y1 + ( 0.776114)*Z1 + (   22.392907)
     Y2 = ( 0.842463)*X1 + (-0.350943)*Y1 + (-0.408772)*Z1 + (  -28.111883)
     Z2 = (-0.525542)*X1 + (-0.702319)*Y1 + (-0.480160)*Z1 + (  160.127674)