CE Algorithm, version 1.00, 1998.

Chain 1: pdb3do9.ent:B (Size=188) 
Chain 2: pdb1pw4.ent:A (Size=451)

Alignment length = 62 Rmsd = 4.19A Z-Score = 4.2 Gaps = 10(16.1%) CPU = 8s Sequence identities = 6.2%

Chain 1:  110 QNANYVAVLEENPYLPKHIEVNEKDRLLAERFLEESVFSFRRERLLKQIDEALDKQDKEAFHRLTAELKM
Chain 2:  331 VTIATIVYWMNPA------GNPTVDMICMIVIGFLIYGPVMLIGLHALELA----PKKAAGTAAGFTGLF

Chain 1:  180 LEGH
Chain 2:  391 GYLG

     X2 = ( 0.808420)*X1 + ( 0.312953)*Y1 + (-0.498515)*Z1 + (   -2.917570)
     Y2 = (-0.046228)*X1 + ( 0.878083)*Y1 + ( 0.476269)*Z1 + (   71.481183)
     Z2 = (-0.586788)*X1 + ( 0.361980)*Y1 + (-0.724327)*Z1 + (   83.506607)