CE Algorithm, version 1.00, 1998.

Chain 1: pdb3do9.ent:A (Size=188) 
Chain 2: pdb1kqf.ent:C (Size=217)

Alignment length = 91 Rmsd = 5.46A Z-Score = 4.2 Gaps = 70(76.9%) CPU = 4s Sequence identities = 7.6%

Chain 1:   94 NRDEDIYIQ-------LNFK----------------------------------------------SSFQ
Chain 2:    2 SKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM

Chain 1:  111 NANYVAVLE---EN---------PYLPKHIEVNEK---DRLLAERFLEESVFSFRRERLLKQID--EALD
Chain 2:   72 FVRFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQ

Chain 1:  164 KQDKEAFHRLTAELKMLEGHHH
Chain 2:  142 YFPMQVVRYSLLIHAAAGIILI

     X2 = (-0.515104)*X1 + (-0.763627)*Y1 + ( 0.389283)*Z1 + (   73.942804)
     Y2 = ( 0.025664)*X1 + ( 0.440227)*Y1 + ( 0.897519)*Z1 + (  -71.113847)
     Z2 = (-0.856743)*X1 + ( 0.472306)*Y1 + (-0.207165)*Z1 + (   27.761500)