DaliLite: Structural Neighbours

Query: 3C6FD MOLECULE: YETF PROTEIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  3C6F-A 16.7  0.7  137   137  100   YETF PROTEIN;                                              "         
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No 1: 3C6FA  MOLECULE: YETF PROTEIN;                                              

DSSP  LEEEEELLEELHHHHHHLLLLHHHHHHHHHHLLLLLHHHEEEEEELLLLLEEEEELHHHL
Query PNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKSDFD   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct PNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKSDFD   60
DSSP  LEEEEELLEELHHHHHHLLLLHHHHHHHHHHLLLLLHHHEEEEEELLLLLEEEEELHHHL


DSSP  LLLLLLLLLLLLLLLLLEEEEELLEELHHHHHHHLLLHHHHHHHHHHHLLLLHHHEEEEE
Query KPTNKDMQIPSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNIDKTEDVLFAE  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct KPTNKDMQIPSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNIDKTEDVLFAE  120
DSSP  LLLLLLLLLLLLLLLLLEEEEELLEELHHHHHHHLLLHHHHHHHHHHLLLLLHHHEEEEE


DSSP  ELLLLLLEEEEHHHHHHl
Query WHKNKPLYTVTYEQSRSt  138
ident ||||||||||||||||| 
Sbjct WHKNKPLYTVTYEQSRS.  137
DSSP  ELLLLLLEEEELLLLLL.