DaliLite: Structural Neighbours

Query: 3C6FA MOLECULE: YETF PROTEIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  3C6F-A 18.6  0.0  137   137  100   YETF PROTEIN;                                              "         
   2:  1A0G-A  3.0  3.4   56   280   11   D-AMINO ACID AMINOTRANSFERASE;                             "         
   3:  1MRU-A  2.9  3.8   50   269   10   PROBABLE SERINE/THREONINE-PROTEIN KINASE PKNB;             "         
   4:  2FB8-A  2.6 10.3   56   259    4   B-RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN              "         
   5:  1I1K-A  2.5  2.6   53   298    8   BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE;                "         
   6:  1A04-A  2.3  3.2   44   205   18   NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL;           "         
   7:  2GU1-A  2.2  2.8   51   324   10   ZINC PEPTIDASE;                                            "         
   8:  1UC8-A  2.2  2.9   48   254    4   LYSINE BIOSYNTHESIS ENZYME;                                "         
   9:  2COG-A  2.1  3.4   53   358    9   BRANCHED CHAIN AMINOTRANSFERASE 1, CYTOSOLIC;              "         
  10:  1Y0N-A  2.1  3.2   44    71    2   HYPOTHETICAL UPF0270 PROTEIN PA3463;                       "         
  11:  1DG3-A  2.1  5.2   46   540   17   PROTEIN (INTERFERON-INDUCED GUANYLATE-BINDING              "         
  12:  1S1I-K  2.0  4.1   48   131    8   5.8S/25S RIBOSOMAL RNA;                                    "         
-

No 1: 3C6FA  MOLECULE: YETF PROTEIN;                                              

DSSP  LEEEEELLEELHHHHHHLLLLHHHHHHHHHHLLLLLHHHEEEEEELLLLLEEEEELHHHL
Query PNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKSDFD   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct PNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKSDFD   60
DSSP  LEEEEELLEELHHHHHHLLLLHHHHHHHHHHLLLLLHHHEEEEEELLLLLEEEEELHHHL


DSSP  LLLLLLLLLLLLLLLLLEEEEELLEELHHHHHHHLLLHHHHHHHHHHLLLLLHHHEEEEE
Query KPTNKDMQIPSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNIDKTEDVLFAE  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct KPTNKDMQIPSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNIDKTEDVLFAE  120
DSSP  LLLLLLLLLLLLLLLLLEEEEELLEELHHHHHHHLLLHHHHHHHHHHLLLLLHHHEEEEE


DSSP  ELLLLLLEEEELLLLLL
Query WHKNKPLYTVTYEQSRS  137
ident |||||||||||||||||
Sbjct WHKNKPLYTVTYEQSRS  137
DSSP  ELLLLLLEEEELLLLLL


No 2: 1A0GA  MOLECULE: D-AMINO ACID AMINOTRANSFERASE;                             

DSSP  leeeeelleelhhhhhhllllhhhhhhhhhhlllllhhheeeeeellllleeeeelhhhl
Query pnivirkgelqykvmkknkidinqlqsmlrqagsfsiqeveyaimetngmvsvlpksdfd   60
ident                                                             
Sbjct ..............................................gytlwndqivkdee   14
DSSP  ..............................................leeeelleeeehhh


DSSP  llllllllllllllLLLEEeEELL....EELHHHHHHHL...............lLHHHH
Query kptnkdmqipsksvSLPITlIIDG....EIVRDNLKEAG...............vDEQWL  101
ident                               |                          | |
Sbjct vkidkedrgyqfgdGVYEV.VKVYngemFTVNEHIDRLYasaekiritipytkdkFHQLL   73
DSSP  lllllllhhhhhllEEEEE.EEEElleeLLHHHHHHHHHhhhhhllllllllhhhHHHHH


DSSP  HHHHHHLLLllhhHEEEEEELL..................LLLLEEEELlLLLL......
Query KQEMKKKNIdkteDVLFAEWHK..................NKPLYTVTYeQSRS......  137
ident      |                                      ||              
Sbjct HELVEKNEL....NTGHIYFQVtrgtsprahqfpentvkpVIIGYTKEN.PRPLenlekg  128
DSSP  HHHHHHHLL....LLEEEEEEEelllllllllllllllllEEEEEEEEL.LLLHhhhhhl


DSSP  ............................................................
Query ............................................................  137
ident                                                             
Sbjct vkatfvedirwlrcdikslnllgavlakqeahekgcyeailhrnntvtegsssnvfgikd  188
DSSP  eeeeeeellllllllllllllhhhhhhhhhhhhlllleeeeeelleeeeellleeeeeel


DSSP  ............................................................
Query ............................................................  137
ident                                                             
Sbjct gilythpannmiakgitrdvviacaneinmpvkeipftthealkmdelfvtsttseitpv  248
DSSP  leeelllllllllllhhhhhhhhhhhhlllleelllllhhhhlllleeeeeellleeeee


DSSP  ................................
Query ................................  137
ident                                 
Sbjct ieidgklirdgkvgewtrklqkqfetkipkpl  280
DSSP  eeelleelllllllhhhhhhhhhhhlllllll


No 3: 1MRUA  MOLECULE: PROBABLE SERINE/THREONINE-PROTEIN KINASE PKNB;             

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct tpshlsdryelgeilgfggmsevhlardlrlhrdvavkvlradlardpsfylrfrreaqn   60
DSSP  lllllllleeeeeeeeellleeeeeeeelllleeeeeeeelllllllllhhhhhhhhhhh


DSSP  ..................................LEEEeelleeLHHHhHHLL..lLHHH
Query ..................................PNIVirkgelQYKVmKKNK..iDINQ   24
ident                                                             
Sbjct aaalnhpaivavydtgeaetpagplpyivmeyvdGVTL....rdIVHT.EGPMtpkRAIE  115
DSSP  hhllllllllleeeeeeeeelleeeeeeeeelllEEEH....hhHHHH.LLLLlhhHHHH


DSSP  HHHHHHHLL......lllhHHEE..EEEELLLLLEEEEELHHhLLLL.............
Query LQSMLRQAG......sfsiQEVE..YAIMETNGMVSVLPKSDfDKPT.............   63
ident       ||             |            | |                       
Sbjct VIADACQALnfshqngiihRDVKpaNIMISATNAVKVMDFGI.ARAItaqylspeqargd  174
DSSP  HHHHHHHHHhhhhhlleelLLLLllLEEEELLLLEEELLLLL.LEELllllllhhhhlll


DSSP  .....................lllllllllllllleeeeelleelhhhhhhhlllhhhhh
Query .....................nkdmqipsksvslpitliidgeivrdnlkeagvdeqwlk  102
ident                                                             
Sbjct svdarsdvyslgcvlyevltgeppftgdspvsvayqhvredpippsarheglsadldavv  234
DSSP  lllhhhhhhhhhhhhhhhhhlllllllllhhhhhhhhlllllllhhhhlllllhhhhhhh


DSSP  hhhhhlllllhhheeeeeelllllleeeellllll
Query qemkkknidktedvlfaewhknkplytvtyeqsrs  137
ident                                    
Sbjct lkalaknpenryqtaaemradlvrvhngeppeapk  269
DSSP  hhhllllhhhllllhhhhhhhhhhhhlllllllll


No 4: 2FB8A  MOLECULE: B-RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN              

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct dweipdgqitvgqrigsgsfgtvykgkwhgdvavkmlnvtaptpqqlqafknevgvlrkt   60
DSSP  llllllllleeeeeeeelllleeeeeellleeeeeelllllllhhhhhhhhhhhhhhlll


DSSP  .........................LEEEeelleeLHHHhHHLL..lLHHHHHHHHHHLL
Query .........................PNIVirkgelQYKVmKKNK..iDINQLQSMLRQAG   33
ident                                                          |  
Sbjct rhvnillfmgystkpqlaivtqwceGSSL....yhHLHIiETKFemiKLIDIARQTAQGM  116
DSSP  llllllleeeeellllleeeeelllEEEH....hhHHHLlLLLLlhhHHHHHHHHHHHHH


DSSP  ......lllhHHEE..EEEELLLLLEEEEELHHH......llllLLLLL...........
Query ......sfsiQEVE..YAIMETNGMVSVLPKSDF......dkptNKDMQ...........   68
ident                          |                                  
Sbjct dylhaksiihRDLKsnNIFLHEDLTVKIGDFGLAtvsgsilwmaPEVIRmqdknpysfqs  176
DSSP  hhhhhlllllLLLLllLEEEELLLEEEELLLLLLlllllhhhllHHHHLllllllllhhh


DSSP  ................................LLLLllllleeeeelleelhhhhhhhll
Query ................................IPSKsvslpitliidgeivrdnlkeagv   96
ident                                                             
Sbjct dvyafgivlyelmtgqlpysninnrdqiifmvGRGY..................lspdls  218
DSSP  hhhhhhhhhhhhllllllllllllhhhhhhhhHHLL..................llllhh


DSSP  lhhhhhhhhhhlllllhhheeeeeelllllleeeellllll
Query deqwlkqemkkknidktedvlfaewhknkplytvtyeqsrs  137
ident                                          
Sbjct kvrsncpkamkrlmaeclkkkrderplfpqilasiellars  259
DSSP  hllllllhhhhhhhhhhhlllhhhlllhhhhhhhhhhhhll


No 5: 1I1KA  MOLECULE: BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE;                

DSSP  leeeeelleelhhhhhhllllhhhhhhhhhhlllllhhheeeeeellllleeeeelhhhl
Query pnivirkgelqykvmkknkidinqlqsmlrqagsfsiqeveyaimetngmvsvlpksdfd   60
ident                                                             
Sbjct ............................................kadyiwfngemvrwed   16
DSSP  ............................................lllleeelleeelhhh


DSSP  llllllllllllllLLLEEEEEL......LEEL.HHHHHHHL...............lLH
Query kptnkdmqipsksvSLPITLIID......GEIV.RDNLKEAG...............vDE   98
ident               |                   |                         
Sbjct akvhvmshalhygtSVFEGIRCYdshkgpVVFRhREHMQRLHdsakiyrfpvsqsideLM   76
DSSP  lllllllhhhhhllEEELLEEEEeelleeEEELhHHHHHHHHhhhhhhlllllllhhhHH


DSSP  HHHHHHHHHLLLllhhHEEEEEELL.................LLLLEEEEL.........
Query QWLKQEMKKKNIdkteDVLFAEWHK.................NKPLYTVTY.........  132
ident         | |                                                 
Sbjct EACRDVIRKNNL....TSAYIRPLIfvgdvgmgvnppagystDVIIAAFPWaleqgidam  132
DSSP  HHHHHHHHHLLL....LLEEEEEEEellllllllllllllllEEEEEEEELllllleeee


DSSP  ............................................................
Query ............................................................  132
ident                                                             
Sbjct vsswnraapntiptaakaggnylssllvgsearrhgyqegialdvngyisegagenlfev  192
DSSP  elllllllllllllllllhhhhhhhhhhhhhhhhlllleeeeellllleeeellleeeee


DSSP  ............................................................
Query ............................................................  132
ident                                                             
Sbjct kdgvlftppftssalpgitrdaiiklakelgievreqvlsreslyladevfmsgtaaeit  252
DSSP  lllleeellhhhlllllhhhhhhhhhhhhlllleeellllllhhhhlleeeeeellleee


DSSP  .........................................lllll
Query .........................................eqsrs  137
ident                                               
Sbjct pvrsvdgiqvgegrcgpvtkriqqaffglftgetedkwgwldqvnq  298
DSSP  eeeeelleelhhhlllhhhhhhhhhhhhhhlllllllllleeelll


No 6: 1A04A  MOLECULE: NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL;           

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct epatilliddhpmlrtgvkqlismapditvvgeasngeqgielaesldpdlilldlnmpg   60
DSSP  lleeeeeelllhhhhhhhhhhhllllleeeeeeellhhhhhhhhhhhllleeeeelllll


DSSP  ...............leeeeelleelhhhhhhllllhhhhhhhhhhlllllhhheeeeee
Query ...............pnivirkgelqykvmkknkidinqlqsmlrqagsfsiqeveyaim   45
ident                                                             
Sbjct mngletldklrekslsgrivvfsvsnheedvvtalkrgadgyllkdmepedllkalhqaa  120
DSSP  llhhhhhhhhhhllllleeeeeellllhhhhhhhhhlllleeeellllhhhhhhhhhhhh


DSSP  llllleeeeelhhhlllllllllllllllllleeEEELlEELHHHHHHHL.....LLHHH
Query etngmvsvlpksdfdkptnkdmqipsksvslpitLIIDgEIVRDNLKEAG.....VDEQW  100
ident                                   ||                        
Sbjct agemvlsealtpvlaaslerdvnqltprerdilkLIAQ.GLPNKMIARRLditesTVKVH  179
DSSP  hlllllllllhhhhhhhllllhhhllhhhhhhhhHHHL.LLLHHHHHHHHlllhhHHHHH


DSSP  HHHHHHHLLLLLHHHEEeeeelllllleeEELLLLL.l
Query LKQEMKKKNIDKTEDVLfaewhknkplytVTYEQSR.s  137
ident  |   ||                      |   | |  
Sbjct VKHMLKKMKLKSRVEAA............VWVHQERif  205
DSSP  HHHHHHHHLLLLHHHHH............HHHHHHLll


No 7: 2GU1A  MOLECULE: ZINC PEPTIDASE;                                            

DSSP  ..................leeeeelleelhhhhhhllllhhhhhhhhhhlllllhhheee
Query ..................pnivirkgelqykvmkknkidinqlqsmlrqagsfsiqevey   42
ident                                                             
Sbjct rihymvkvgdtlsgifaqlgvpysilqkilsvdldhlqldmiqpgeelelmmddmgqlsr   60
DSSP  leeeellllllhhhhhhhllllhhhhhhhhhhhhhlllhhhllllleeeeeellllleee


DSSP  eeellllleeeeelhhhlllllllllllllllLLLEEeEELL.....eELHHHHhhhlLL
Query aimetngmvsvlpksdfdkptnkdmqipsksvSLPITlIIDG.....eIVRDNLkeagVD   97
ident                                                   |         
Sbjct liyhmsivekaiytrendgsfsydfqeisgewREILF.SGEIngsfsvSARRVG....LT  115
DSSP  eeeeeelleeeeeeellllleeeeeeellleeEEEEE.EEELlllhhhHHHHLL....LL


DSSP  HHHHHHHHHHL..LLLL...hhheEEEEELL............LLLLEEEELLLL.....
Query EQWLKQEMKKK..NIDK...tedvLFAEWHK............NKPLYTVTYEQS.....  135
ident               ||         |    |                             
Sbjct SSQVANITQVMkdKIDFsrslradRFDILVKqqylgehntgnsEIKAISFKLAKGdvsaf  175
DSSP  HHHHHHHHHHHllLLLLlllllllEEEEEEEeeeelleeeeeeEEEEEEEELLLLleeee


DSSP  ............................................................
Query ............................................................  135
ident                                                             
Sbjct laedgrfydragnslerafnrypvdkayrqitsgfnpkrkhpvtgrvvphngtdfatpig  235
DSSP  ellllleeellllllllllllllllhhhlleeellllllllllllllllllleeelllll


DSSP  ............................................................
Query ............................................................  135
ident                                                             
Sbjct apvystgdgkvivvrkhpyagnylviehnsvyktrylhldkilvkkgqlvkrgqkialag  295
DSSP  leeelllleeeeeeeeellleeeeeeelllleeeeeeeeleelllllleelllleeeell


DSSP  ...........................ll
Query ...........................rs  137
ident                              
Sbjct atgrltgphlhfevlvrnrpvdamkadlp  324
DSSP  llllllllleeeeeeelleeellllllll


No 8: 1UC8A  MOLECULE: LYSINE BIOSYNTHESIS ENZYME;                                

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct mlailydrirpdermlferaealglpykkvyvpalpmvlgerpkelegvtvalercvsqs   60
DSSP  leeeeellllhhhhhhhhhhhhhllleeeeehhhlleelllllhhhlllleeeellllhh


DSSP  .............................leeeeelleelhhhhhhllllhhhhhhhhhh
Query .............................pnivirkgelqykvmkknkidinqlqsmlrq   31
ident                                                             
Sbjct rglaaaryltalgipvvnrpevieacgdkwatsvalakaglpqpktalatdreealrlme  120
DSSP  hhhhhhhhhhhlllleellhhhhhhhhlhhhhhhhhhhllllllleeeellhhhhhhhhh


DSSP  lllllhhheeeeeellllleeeeelhhhlllllllllllllllLLLEEEE...ellEELH
Query agsfsiqeveyaimetngmvsvlpksdfdkptnkdmqipsksvSLPITLI...idgEIVR   88
ident                                               |             
Sbjct afgypvvlkpvigxxxxxxxxxxxxxxgfqhqlfyiqeyvekpGRDIRVFvvgeraIAAI  180
DSSP  hhllleeeellllllllhhhhhhhhhllllllleeeeelllllLLLEEEEeelleeEEEE


DSSP  .....HHHHhhLLLHHHHHHHHHHLLLLLhhheeEEEELL...LLLL.EEEEL.......
Query .....DNLKeaGVDEQWLKQEMKKKNIDKtedvlFAEWHK...NKPL.YTVTY.......  132
ident        |                                                    
Sbjct yraenCPLT..EEVARLSVKAAEAVGGGV....vAVDLFEserGLLVnEVNHTmefknsv  234
DSSP  elleeLLLL..HHHHHHHHHHHHHLLLLE....eEEEEEEellEEEEeEEELLlllllhh


DSSP  ...............lllll
Query ...............eqsrs  137
ident                     
Sbjct httgvdipgeilkyawslas  254
DSSP  hhhlllhhhhhhhhhhhlll


No 9: 2COGA  MOLECULE: BRANCHED CHAIN AMINOTRANSFERASE 1, CYTOSOLIC;              

DSSP  leeeeelleelhhhhhhllllhhhhhhhhhhlllllhhheeeeeellllleeeeelhhhl
Query pnivirkgelqykvmkknkidinqlqsmlrqagsfsiqeveyaimetngmvsvlpksdfd   60
ident                                                             
Sbjct ....vgtfkakdlivtpatilkekpdpnlvfgtvftdhmltvewssefgwekphikplqn   56
DSSP  ....lllllhhhleelllllllllllllllllllllleeeeeeeellleellleeeelll


DSSP  llllllllllllllLLLEEeEELL.........EELHHHHHHHL..............lL
Query kptnkdmqipsksvSLPITlIIDG.........EIVRDNLKEAG..............vD   97
ident                |                      |                     
Sbjct lslhpgssalhyavELFEG.LKAFrgvdnkirlFQPNLNMDRMYrsavratlpvfdkeeL  115
DSSP  eeellllhhhhlllEEELL.EEEEellllleeeELHHHHHHHHHhhhhhhllllllhhhH


DSSP  HHHHHHHHHHLL...lllhhhEEEEEELL...............LLLLEEEELLLL....
Query EQWLKQEMKKKN...idktedVLFAEWHK...............NKPLYTVTYEQS....  135
ident      |  |             |                                     
Sbjct LECIQQLVKLDQewvpystsaSLYIRPTFigtepslgvkkptkaLLFVLLSPVGPYfnpv  175
DSSP  HHHHHHHHHHLHhhlllllllEEEEEEEEeellllllllllleeEEEEEEEEELLLllle


DSSP  ............................................................
Query ............................................................  135
ident                                                             
Sbjct slwanpkyvrawkggtgdckmggnygsslfaqceavdngcqqvlwlygedhqitevgtmn  235
DSSP  eeeellllllllllllllllllhhhhllhhhhhhhhllllleeeeeelllleeeeellee


DSSP  ............................................................
Query ............................................................  135
ident                                                             
Sbjct lflywinedgeeelatppldgiilpgvtrrcildlahqwgefkvseryltmddlttaleg  295
DSSP  eeeeeellllleeeeellllllllllhhhhhhhhhhhhhllleeeellllhhhhhhhhll


DSSP  ............................................................
Query ............................................................  135
ident                                                             
Sbjct nrvremfgsgtacvvcpvsdilykgetihiptmengpklasrilskltdiqygreerdwt  355
DSSP  lleeeeeeelllllleeeeeeeelleeeelllhhhllhhhhhhhhhhhhhhlllllllle


DSSP  .ll
Query .rs  137
ident    
Sbjct ivl  358
DSSP  eel


No 10: 1Y0NA  MOLECULE: HYPOTHETICAL UPF0270 PROTEIN PA3463;                       

DSSP  leeeeelleelhhhhhhllllhhhhhhhhhhlllllhhheeeeeellllleeeeelhhhl
Query pnivirkgelqykvmkknkidinqlqsmlrqagsfsiqeveyaimetngmvsvlpksdfd   60
ident                                                             
Sbjct ............................................................    0
DSSP  ............................................................


DSSP  lllllllllllllllLLEEEEelleelhhhhhhhllLHHHHHHHHHHLL..........l
Query kptnkdmqipsksvsLPITLIidgeivrdnlkeagvDEQWLKQEMKKKN..........i  110
ident                                         |                   
Sbjct ...............GHMLIP...........hdllEADTLNNLLEDFVtretpldvrve   34
DSSP  ...............LLEELL...........hhhlLHHHHHHHHHHHHhllllhhhhhh


DSSP  LLHHHE....EEEEELL.LLLLEEEELLLL.....ll
Query DKTEDV....LFAEWHK.NKPLYTVTYEQS.....rs  137
ident                                      
Sbjct RARHALrrgeAVILFDPeSQQCQLMLRSEVpaellrd   71
DSSP  HHHHHHhlllEEEEELLlLLLEEEEEHHHLlhhhlll


No 11: 1DG3A  MOLECULE: PROTEIN (INTERFERON-INDUCED GUANYLATE-BINDING              

DSSP  leeeeelleelhhhhhhllllhhhhhhhhhhlllllhhheeeeeellllleeeeelhhhl
Query pnivirkgelqykvmkknkidinqlqsmlrqagsfsiqeveyaimetngmvsvlpksdfd   60
ident                                                             
Sbjct ............................................................    0
DSSP  ............................................................


DSSP  llllllllllllllLLLEEEEEL....LEELHHHHHHHL.......llhhhhhhhhHHLL
Query kptnkdmqipsksvSLPITLIID....GEIVRDNLKEAG.......vdeqwlkqemKKKN  109
ident                 |  ||             ||                     |  
Sbjct ............hmTGPMCLIENtngrLMANPEALKILSaitqpmvvvaivglyrtGKSY   48
DSSP  ............llLLLEEEEEEelleEEELHHHHHHHHhlllleeeeeeellhhhLHHH


DSSP  ....lllhhheEEEEELL..........LLLLEEEELLLLLL..................
Query ....idktedvLFAEWHK..........NKPLYTVTYEQSRS..................  137
ident                                | |                          
Sbjct lmnklagkkhtKGIWMWCvphpkkpghiLVLLDTEGLGDVEKgdnqndswifalavllss  108
DSSP  hhhhhllllllLEEEEEEeellllllleEEEEEEELLLLLLLlllllhhhhhhhhhhhll


DSSP  ............................................................
Query ............................................................  137
ident                                                             
Sbjct tfvynsigtinqqamdqlyyvtelthrirsksdsadfvsffpdfvwtlrdfsldlqpltp  168
DSSP  eeeeeeellllhhhhhhlhhhhhhhhhllllllhhhhhhllleeeeeeellllllllllh


DSSP  ............................................................
Query ............................................................  137
ident                                                             
Sbjct deyltyslklkkgtsqkdetfnlprlcirkffpkkkcfvfdrpvheldpefvqqvadfcs  228
DSSP  hhhhhhhllllllllhhhhhhhhhhhhhhhhllleeeeelllllllllhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................  137
ident                                                             
Sbjct yifsnsktktlsggiqvngprleslvltyvnaissgdlpcmenavlalaqiensaavqka  288
DSSP  hhhhhlllleellleellhhhhhhhhhhhhhhhhllllllhhhhhhhhhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................  137
ident                                                             
Sbjct iahyeqqmgqkvqlpteslqelldlhrdsereaievfirssfkdvdhlfqkelaaqlekk  348
DSSP  hhhhhhhhhhhlllllllhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................  137
ident                                                             
Sbjct rddfckqnqeassdrcsgllqvifspleeevkagiyskpggyrlfvqklqdlkkkyyeep  408
DSSP  hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlllllllhhhhhhhhhhhhhhhhhhll


DSSP  ............................................................
Query ............................................................  137
ident                                                             
Sbjct rkgiqaeeilqtylkskesmtdailqtdqtltekekeievervkaesaqasakmlhemqr  468
DSSP  lllllhhhhhhhhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................  137
ident                                                             
Sbjct kneqmmeqkersyqehlkqltekmendrvqllkeqertlalklqeqeqllkegfqkesri  528
DSSP  hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlllhhhhhh


DSSP  ............
Query ............  137
ident             
Sbjct mkneiqdlqtkm  540
DSSP  hhhhhhhhhhhl


No 12: 1S1IK  MOLECULE: 5.8S/25S RIBOSOMAL RNA;                                    

DSSP  leeeeelleelhhhhhhllllhhhhhhhhhhlllllhhheeeeeellllleeeeelhhhl
Query pnivirkgelqykvmkknkidinqlqsmlrqagsfsiqeveyaimetngmvsvlpksdfd   60
ident                                                             
Sbjct ............................................................    0
DSSP  ............................................................


DSSP  lllllllllllllllllEEEEEL......leeLHHHHHHHLLLHHHHHHHHHHLLLllhh
Query kptnkdmqipsksvslpITLIID......geiVRDNLKEAGVDEQWLKQEMKKKNIdkte  114
ident                    |                    |           |       
Sbjct .................LYLRAVggevgasaaLAPKIGPLGLSPKKVGEDIAKATKefkg   43
DSSP  .................LEEEELlllllllllLHHHHHHHLLLHHHHHHHHHHHLLllll


DSSP  HEEEEEELLL...llLEEE......ellLLLL............................
Query DVLFAEWHKN...kpLYTV......tyeQSRS............................  137
ident                   |                                         
Sbjct IKVTVQLKIQnrqaaASVVpsasslvitALKEpprdrkkdknvkhsgniqldeiieiarq  103
DSSP  LLEEEELEELlllleELLLllhhhhhhhHHLLlllllllllllllleellhhhhhhhhhh


DSSP  ............................
Query ............................  137
ident                             
Sbjct mrdksfgrtlasvtkeilgtaqsvgcrv  131
DSSP  hllllllllhhhhhhhhhhhhhhhleel