DaliLite: Structural Neighbours

Query: 3BQTA MOLECULE: UNCHARACTERIZED PROTEIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  3BQS-A 17.8  0.6   82    85   99   UNCHARACTERIZED PROTEIN;                                   "         
   2:  2DPI-A  4.4  4.1   60   372   18   DNA POLYMERASE IOTA;                                       "         
   3:  1OW5-A  3.7  2.1   49    60   10   SERINE/THREONINE-PROTEIN KINASE STE11;                     "         
   4:  2DL0-A  3.4  2.1   52    97   15   SAM AND SH3 DOMAIN-CONTAINING PROTEIN 1;                   "         
   5:  1X40-A  3.3  2.2   52    91   10   ARAP2;                                                     "         
   6:  2EAO-A  3.2  2.1   54    99   11   EPHRIN TYPE-B RECEPTOR 1;                                  "         
   7:  2NRT-A  3.1  2.5   50   217   16   UVRABC SYSTEM PROTEIN C;                                   "         
   8:  2CSB-A  3.1  3.2   60   517    7   TOPOISOMERASE V;                                           "         
   9:  2AQ0-A  3.1  4.1   55    84   16   DNA REPAIR ENDONUCLEASE XPF;                               "         
  10:  1DGJ-A  2.9  3.8   59   906    5   ALDEHYDE OXIDOREDUCTASE;                                   "         
  11:  1DCE-A  2.9  4.0   59   567   10   PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA               "         
  12:  1RQ6-A  2.7  2.3   45    62    2   30S RIBOSOMAL PROTEIN S17E;                                "         
  13:  1Q1V-A  2.7  2.9   48    70   15   DEK PROTEIN;                                               "         
  14:  1NHA-A  2.5  3.1   45    67   13   TRANSCRIPTION INITIATION FACTOR IIF, ALPHA                 "         
  15:  1K78-A  2.3  3.3   46   124    7   PAIRED BOX PROTEIN PAX5;                                   "         
  16:  2D32-A  2.2  3.1   53   510   11   GLUTAMATE--CYSTEINE LIGASE;                                "         
  17:  1T98-A  2.2  2.9   47   266   11   CHROMOSOME PARTITION PROTEIN MUKF;                         "         
  18:  2V75-A  2.1  2.7   50    89   14   NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2;           "         
  19:  2FUG-2  2.1  2.1   42   178    7   NADH-QUINONE OXIDOREDUCTASE CHAIN 1;                       "         
  20:  2DOA-A  2.1  2.6   51   104   16   RNA POLYMERASE II ELONGATION FACTOR ELL;                   "         
  21:  1UN8-A  2.1  3.7   50   542   12   DIHYDROXYACETONE KINASE;                                   "         
  22:  1WER-A  2.0  3.4   53   324    8   P120GAP;                                                   "         
  23:  1P8C-A  2.0  3.3   52   111    8   CONSERVED HYPOTHETICAL PROTEIN;                            "         
-

No 1: 3BQSA  MOLECULE: UNCHARACTERIZED PROTEIN;                                   

DSSP  ...LLLLLLLLLLLHHHHHHHLLLLLHHHHHLLHHHHHHHHHHHHLLLLLHHHHHHHHHH
Query ...NLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCXSELYALEGA   57
ident    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct slaNLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYALEGA   60
DSSP  lllLHHHLLLLLHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHH


DSSP  HLLLLHHHLLHHHHHHHHHHHHHHL
Query VQGIRWHGLDEAKKIELKKFHQSLE   82
ident |||||||||||||||||||||||||
Sbjct VQGIRWHGLDEAKKIELKKFHQSLE   85
DSSP  HHLLLHHHLLHHHHHHHHHHHHHHL


No 2: 2DPIA  MOLECULE: DNA POLYMERASE IOTA;                                       

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct ssrvivhvdldcfyaqvemisnpelkdkplgvqqkylvvtcnyearklgvkklmnvrdak   60
DSSP  lllleeeeeellhhhhhhhhhlhhhlllleeeeelleeeeelhhhhhlllllleehhhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct ekcpqlvlvngedltryremsykvtelleefspvverlgfdenfvdltemvekrlqqlqs  120
DSSP  lllllleeeellllhhhhhhhhhhhhhhhhhllleeeellleeeeelhhhhhhhhhhlll


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct delsavtvsghvynnqsinlldvlhirllvgsqiaaemreamynqlgltgcagvasnkll  180
DSSP  lhhhlllllleehhhlllllllhhhhhhhhhhhhhhhhhhhhhhhhllleeeeeellhhh


DSSP  .............................LLLLLLLLLLLHHHHHHHLLLLLHHHHHLLH
Query .............................NLSELPNIGKVLEQDLIKAGIKTPVELKDVG   31
ident                                 | | ||      |   ||     |    
Sbjct aklvsgvfkpnqqtvllpescqhlihslnHIKEIPGIGYKTAKCLEALGINSVRDLQTFS  240
DSSP  hhhhhllllllleeellhhhhhhhhhhllLHHHLLLLLHHHHHHHHHLLLLLHHHHHHLL


DSSP  HHHHHHHhhhhlllLLHHHHHHHHHHHLLLLhhHLLHH......................
Query SKEAFLRiwendssVCXSELYALEGAVQGIRwhGLDEA......................   69
ident  |               |          |                               
Sbjct PKILEKE.......LGISVAQRIQKLSFGED..NSPVIlsgppqsfseedsfkkcsseve  291
DSSP  HHHHHHH.......HLHHHHHHHHHHHLLLL..LLLLLlllllleeeeeellllllllll


DSSP  ............................................................
Query ............................................................   69
ident                                                             
Sbjct aknkieellasllnrvcqdgrkphtvrliirryssekhygresrqcpipshviqvmtpmv  351
DSSP  llhhhhhhhhhhhhhhhhhllleeeeeeeellllllllllleeeeeellhhhhllhhhhh


DSSP  ........hhhhhhhhhhhhl
Query ........kkielkkfhqsle   82
ident                      
Sbjct dilmklfrnmtllsvcfcnlk  372
DSSP  hhhhhhhhlllleeeeeeeel


No 3: 1OW5A  MOLECULE: SERINE/THREONINE-PROTEIN KINASE STE11;                     

DSSP  .LLLLL..lllLLLHHHHHHHLLLLLHHHHHlLHHHhhHHHHHhhlllLLHHHHHHHHHH
Query .NLSEL..pniGKVLEQDLIKAGIKTPVELKdVGSKeaFLRIWendssVCXSELYALEGA   57
ident                    |     |  | |    |                        
Sbjct pFVQLFleeigCTQYLDSFIQCNLVTEEEIK.YLDKdiLIALG....vNKIGDRLKILRK   55
DSSP  lHHHHHhhhhlLLHHHHHHHHHLLLLHHHHH.HLLHhhHHHHL....lLLHHHHHHHHHH


DSSP  HLLllhhhllhhhhhhhhhhhhhhl
Query VQGirwhgldeakkielkkfhqsle   82
ident                          
Sbjct SKS....................fq   60
DSSP  HHH....................ll


No 4: 2DL0A  MOLECULE: SAM AND SH3 DOMAIN-CONTAINING PROTEIN 1;                   

DSSP  ........................LLLLL..lllLLLHHHHHHHLLLLLHHHHHLlHHHH
Query ........................NLSEL..pniGKVLEQDLIKAGIKTPVELKDvGSKE   34
ident                           |              |  ||  |        |  
Sbjct gssgssggglteicrkpvspgcisSVSDWlisigLPMYAGTLSTAGFSTLSQVPS.LSHT   59
DSSP  llllllllllllllllllllllllLHHHHhhhhlLHHHHHHHHHHLLLLLLLHHH.LLHH


DSSP  HHHHHHhhlllLLHHHHHHHHHHHLLLlhhhllhhhhhhhhhhhhhhl
Query AFLRIWendssVCXSELYALEGAVQGIrwhgldeakkielkkfhqsle   82
ident                    |  |                         
Sbjct CLQEAG....iTEERHIRKLLSAARLF......klppgpeamsgpssg   97
DSSP  HHHHHL....lLLHHHHHHHHHHHHLL......lllllllllllllll


No 5: 1X40A  MOLECULE: ARAP2;                                                     

DSSP  ................LLLLL..lllLLLHHHHHHHLLLLLHHHHHLLHhHHHHHHHHhh
Query ................NLSEL..pniGKVLEQDLIKAGIKTPVELKDVGsKEAFLRIWen   42
ident                                      |  |               |   
Sbjct gssgssgmssvsevnvDIKDFlmsinLEQYLLHFHESGFTTVKDCAAIN.DSLLQKIG..   57
DSSP  llllllllllllllllLHHHHhhlllLHHHHHHHHHHLLLLLHHHHHLL.HHHHHHHL..


DSSP  lllLLHHHHHHHHHHHLLLlhhhllhhhhhhhhhhhhhhl
Query dssVCXSELYALEGAVQGIrwhgldeakkielkkfhqsle   82
ident                 | |                     
Sbjct ..iSPTGHRRRILKQLQII....lskmqdipiyasgpssg   91
DSSP  ..lLLHHHHHHHHHHHHHH....hhhllllllllllllll


No 6: 2EAOA  MOLECULE: EPHRIN TYPE-B RECEPTOR 1;                                  

DSSP  .......................LLLLL..LLLLLLHHHHHHHLLLLLHHHHHLLHhHHH
Query .......................NLSEL..PNIGKVLEQDLIKAGIKTPVELKDVGsKEA   35
ident                                            ||             | 
Sbjct gssgssgsqplldrsipdftaftTVDDWlsAIKMVQYRDSFLTAGFTSLQLVTQMT.SED   59
DSSP  lllllllllllllllllllllllLHHHHhhLLLLHHHHHHHHHHLLLLHHHHLLLL.HHH


DSSP  HHHHHhhlllLLHHHHHHHHHHHLLllhhhllhhhhhhhhhhhhhhl
Query FLRIWendssVCXSELYALEGAVQGirwhgldeakkielkkfhqsle   82
ident  |||                                           
Sbjct LLRIG....iTLAGHQKKILNSIHS...mrvqisqsptamasgpssg   99
DSSP  HHHHL....lLLHHHHHHHHHHHHH...hhhhlllllllllllllll


No 7: 2NRTA  MOLECULE: UVRABC SYSTEM PROTEIN C;                                   

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct glrkealeelmkllnmkdfpyriegidishlqgkytvaslvvfedgfpkkgdyrrykieq   60
DSSP  lllhhhhhhhhhhlllllllleeeeeeeeeellleeeeeeeeeelleelhhhleeeeeel


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct dhpddyesirtvvkrryskhplpnllfvdggigqvnaaiealkeigkdcpvvglakkeet  120
DSSP  llllhhhhhhhhhhhhhllllllleeeelllhhhhhhhhhhhhhlllllleeeellllll


DSSP  ..............................................LLLLLLLLLLLHHH
Query ..............................................NLSELPNIGKVLEQ   14
ident                                                |   | ||     
Sbjct vvfenreihlphdhpvlrllvqirdethrfavsyhrkrrekeslrsVLDNVPGIGPIRKK  180
DSSP  eeelleeellllllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHLLLLLLLHHHHH


DSSP  HHHHlLLLLHHHHHLLHHHHHHHHHHhhlllllhhHHHHHHHHHLLllhhhllhhhhhhh
Query DLIKaGIKTPVELKDVGSKEAFLRIWendssvcxsELYALEGAVQGirwhgldeakkiel   74
ident  ||                |    |                                   
Sbjct KLIE.HFGSLENIRSASLEEIARVIG.........STEIARRVLDI..............  216
DSSP  HHHH.HHLLHHHHHLLLHHHHHHHHL.........LHHHHHHHHHH..............


DSSP  hhhhhhhl
Query kkfhqsle   82
ident         
Sbjct .......l  217
DSSP  .......l


No 8: 2CSBA  MOLECULE: TOPOISOMERASE V;                                           

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct lvydaefvgserefeeeretflkgvkaydgvlatrylxersssakndeellelhqnfill   60
DSSP  llleeeelllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlhhhhllhhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct tgsyacsidptedryqnvivrgvnfdervqrlstggsparyaivyrrgwraiakaldide  120
DSSP  hhhhhhlllllllleeeeeelleehhhhhhlllllllhhhhhhlllllhhhhhhhllllh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct edvpaievravkrnplqpalyrilvrygrvdlxpvtvdevppexageferlierydvpid  180
DSSP  hhlllllllllllllllhhhhhhhhhllllllllllhhhllhhhllllhhhhhhllllll


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct ekeerileilrenpwtphdeiarrlglsvsevegekdpessgiyslwsrvvvnieydert  240
DSSP  hhhhhhhhhhhhlllllhhhhhhhhlllhhhhhlllllllllhhhhhhhhhllllllhhh


DSSP  .........................................................lLL
Query .........................................................nLS    3
ident                                                           | 
Sbjct akrhvkrrdrlleelyehleelserylrhpltrrwivehkrdixrryleqrivecalkLQ  300
DSSP  hhhhhhhhhhhhhhhhhhhhhhhlllllllllhhhhhhhhhhhhhhhhhhhhhhhhhhHH


DSSP  LLLLLLLLHHHHHHHLLLLLHHHHHLLHHHHHHHHHHhhlllLLHHhhhHHHHHHLlllh
Query ELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWendssVCXSelyALEGAVQgirw   63
ident     |       |  |                                            
Sbjct DRYGIREDVALCLARAFDGSISXIATTPYRTLKDVCP....dLTLE...EAKSVNRtlat  353
DSSP  HHHLLLHHHHHHHHHHLLLLHHHHLLLLHHHHHHHLL....lLLHH...HHHHHLHhhhh


DSSP  hhLLHHhhHHHHHH..............................................
Query hgLDEAkkIELKKF..............................................   77
ident                                                             
Sbjct liDEHG..LSPDAAdeliehfesiagilatdleeierxyeegrlseeayraaveiqlael  411
DSSP  hhHHHL..LLHHHHhhhhhhhllhhhhhlllhhhhhhhhhhllllhhhhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................   77
ident                                                             
Sbjct tkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslvpgyaslisi  471
DSSP  hllllllhhhhhhhhhhhllhhhhhhhhhlllhhhhhllllllhhhhhhhlllhhhhhll


DSSP  .........................................hhhhl
Query .........................................hqsle   82
ident                                               
Sbjct rgidreraerllkkyggyskvreagveelredgltdaqirelkglk  517
DSSP  llllhhhhhhhhhhhllhhhhhlllhhhhhhllllhhhhhhhhlll


No 9: 2AQ0A  MOLECULE: DNA REPAIR ENDONUCLEASE XPF;                               

DSSP  ..................LLLLLLLLLLLHHHHHHHLlLLLHHHHHLLHHHHHHHHhhhh
Query ..................NLSELPNIGKVLEQDLIKAgIKTPVELKDVGSKEAFLRiwen   42
ident                    |   |         |     |   ||      |        
Sbjct mdsetlpesekynpgpqdFLLKMPGVNAKNCRSLMHH.VKNIAELAALSQDELTSI....   55
DSSP  lllllllllllllllhhhHHHLLLLLLHHHHHHHHHH.LLLHHHHHHLLHHHHHHH....


DSSP  lllLLHHHHHHHHHHHLlllhhhLLHHhhhhhhhhhhhhl
Query dssVCXSELYALEGAVQgirwhgLDEAkkielkkfhqsle   82
ident            |              |             
Sbjct ..lGNAANAKQLYDFIH......TSFA...evvskgkgkk   84
DSSP  ..hLLHHHHHHHHHHHH......LLLL...llllllllll


No 10: 1DGJA  MOLECULE: ALDEHYDE OXIDOREDUCTASE;                                   

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct metktlivngmarrllvspndllvdvlrsqlqltsvkvgcgkgqcgactvildgkvvrac   60
DSSP  leeeeleellllleeeelllllhhhhhhhllllllllllllllllllleeeelleeeehh


DSSP  ......................lllLLLL.............lLLLHHHHHHhlLLLLhh
Query ......................nlsELPN.............iGKVLEQDLIkaGIKTpv   25
ident                                                             
Sbjct iikmsrvaenasvttlegigapdclHPLQhawiqhgaaqcgfcTPGFIVSAK..ALLD..  116
DSSP  hllhhhllllleeelhhhlllllllLHHHhhhhhhllllllllHHHHHHHHH..HHHH..


DSSP  HHHLLHHHHHHHHHHHHLLL....lLHHHHHHHHHHHLL....llhhHLLH.........
Query ELKDVGSKEAFLRIWENDSS....vCXSELYALEGAVQG....irwhGLDE.........   68
ident |                              |   |                        
Sbjct ENVAPSREDVRDWFQKHHNIcrctgYKPLVDAVMDAAAIlrgektveEISFkmpadgriw  176
DSSP  HLLLLLHHHHHHHHHHLLLLlllllLHHHHHHHHHHHHHhlllllhhHHLLlllllllll


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct gssiprpsavakvtglaefgadaalrmpentlhlalaqakvshalikgidtseaekmpgv  236
DSSP  llllllllhhhhhhlllllhhhhhhhllllleeeeeeellllleeeeeeelhhhhhllle


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct ykvlthkdvkgknritglitfptnkgdgwerpilndskifqygdalaivcadseanaraa  296
DSSP  eeeelhhhllllleellllllllllllllleellllleellllleeeeeeellhhhhhhh


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct aekvkfdlellpeymsapeamapdaieihpgtpnvyydqleekgedtvpffndpanvvae  356
DSSP  hllleeeeeellllllhhhhhllllllllllllleeeeeeeeellllhhhhllllleeee


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct gsyytqrqphlpiepdvgygyineqgqvvihsksvaihlhalmiapglglefpkdlvlvq  416
DSSP  eeeeellllllllllleeeeeellllleeeeellllhhhhhhhhhhhhllllllleeeee


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct nttggtfgykfsptmealvgvavmatgrpchlrynyeqqqnytgkrspfwttmryaadrq  476
DSSP  llllllllhhhllllhhhhhhhhhhhllleeeellhhhhhhllllllleeeeeeeeelll


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct gkilametdwsvdhgpysefgdlltlrgaqyigagygianirgtgrtvatnhcwgaafrg  536
DSSP  lleeeeeeeeeeelllllllhhhhhhhhhhhlllllllleeeeeeeeellllllllllll


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct ygapesefpsevlmdelaeklgmdpfelralncyregdttssgqipevmslpemfdkmrp  596
DSSP  llhhhhhhhhhhhhhhhhhhhlllhhhhhhhhllllllllllllllllllhhhhhhhhhh


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct yyeeskkrvkerstaeikrgvgvalgvygagldgpdtseawvelnddgsvtlgnswedhg  656
DSSP  hhhhhhhhhhlllllleeeeeeeeeeeeeelllllleeeeeeeellllleeeeellllll


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct qgadagslgtahealrplgitpenihlvmndtsktpnsgpaggsrsqvvtgnairvacem  716
DSSP  llhhhhhhhhhhhhlhhhlllhhheeeeelllllllllllllllllllhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct liegmrkpgggfftpaemkaegrpmrydgkwtapakdcdakgqgspfacymyglflteva  776
DSSP  hhhhllllllllllhhhhhhllllleeeeeeelllllllllllllllleeeeeeeeeeee


DSSP  ............................................................
Query ............................................................   68
ident                                                             
Sbjct vevatgkatvekmvcvadigkicnklvvdgqiygglaqgvglalsedyedlkkhstmgga  836
DSSP  eelllleeeeeeeeeeeellllllhhhhhhhhhhhhhhhhhhhhllllllllllllllll


DSSP  hhhhhhhhHHHH................................................
Query akkielkkFHQS................................................   80
ident                                                             
Sbjct gipsikmiPDDIeivyvetprkdgpfgasgvgempltaphaaiingiynacgarvrhlpa  896
DSSP  llllhhhlLLLEeeeellllllllhhhllllllhhhllhhhhhhhhhhhhhlllllllll


DSSP  ........hl
Query ........le   82
ident           
Sbjct rpekvleamp  906
DSSP  lhhhhhhlll


No 11: 1DCEA  MOLECULE: PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA               

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct xhgrlkvktseeqaeakrlereqklklyqsatqavfqkrqageldesvleltsqilganp   60
DSSP  lllllllllllllllllllllhhhhhhhhhhhhhhhhhhhlllllhhhhhhhhhhhhhll


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct dfatlwncrrevlqhletekspeesaalvkaelgflesclrvnpksygtwhhrcwllsrl  120
DSSP  llhhhhhhhhhhhhhhhllllhhhhhhhhhhhhhhhhhhhhhllllhhhhhhhhhhhhll


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct pepnwarelelcarfleadernfhcwdyrrfvaaqaavapaeelaftdslitrnfsnyss  180
DSSP  llllhhhhhhhhhhhhhhllllhhhhhhhhhhhhhllllhhhhhhhhhlllllllllhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct whyrscllpqlhpqpdsgpqgrlpenvllkelelvqnafftdpndqsawfyhrwllgrae  240
DSSP  hhhhhhhhhhhlllllllllllllhhhhhhhhhhhhhhhhhlllllhhhhhhhhhhllll


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct phdvlccvhvsreeaclsvcfsrpltvgsrmgtlllmvdeaplsvewrtpdgrnrpshvw  300
DSSP  lllleeeeeeelllleeeeeeeeeelllllllleeeeellleellllllllllllleeee


DSSP  .................................................lllllllllll
Query .................................................nlselpnigkv   11
ident                                                             
Sbjct lcdlpaaslndqlpqhtfrviwtgsdsqkecvllkdrpecwcrdsatdeqlfrcelsvek  360
DSSP  eeellhhhlllllleeeeeeeelllleeeeeeeelllleeeeellllllllllllllhhh


DSSP  hhhhhHHLL..LLLHH...hhHLLHHhHHHHHHHHHL.LLLLhHHHHHHHHHHLLLlhhH
Query leqdlIKAG..IKTPV...elKDVGSkEAFLRIWEND.SSVCxSELYALEGAVQGIrwhG   65
ident                      |        |     |       |               
Sbjct stvlqSELEscKELQElepenKWCLL.TIILLMRALDpLLYE.KETLQYFSTLKAV.dpM  417
DSSP  hhhhhHHHHhhHHHHHhllllHHHHH.HHHHHHHHHLlHHHH.HHHHHHHHHHHHH.lhH


DSSP  LLHHHHHHHHHHHHHHL...........................................
Query LDEAKKIELKKFHQSLE...........................................   82
ident           ||                                                
Sbjct RAAYLDDLRSKFLLENSvlkmeyadvrvlhlahkdltvlchleqlllvthldlshnrlra  477
DSSP  HHHHHHHHHHHHHHHHHhhhhhhlllleeelllllllllllhhhhlllleeellllllll


DSSP  ............................................................
Query ............................................................   82
ident                                                             
Sbjct lppalaalrclevlqasdnalenvdgvanlprlqelllcnnrlqqsaaiqplvscprlvl  537
DSSP  llhhhhhllllleeelllllllllhhhllllllleeellllllllllllhhhhhllllle


DSSP  ..............................
Query ..............................   82
ident                               
Sbjct lnlqgnslcqeegiqerlaemlpsvssilt  567
DSSP  eellllhhhhllllllhhhhhllllleeel


No 12: 1RQ6A  MOLECULE: 30S RIBOSOMAL PROTEIN S17E;                                

DSSP  .llllllllLLLHHHHHHHLLLllhhhHHLLHHHHHHHHHHHHL....lllLHHHHHHHH
Query .nlselpniGKVLEQDLIKAGIktpveLKDVGSKEAFLRIWEND....ssvCXSELYALE   55
ident                                          |                  
Sbjct mgnirtsfvKRIAKEMIETHPG.....KFTDDFDTNKKLVEEFStvstkhlRNKIAGYIT   55
DSSP  llllllhhhHHHHHHHHLLLLL.....LLLLLHHHHHHHHHLLLllllllhHHHHHHHHH


DSSP  HHHLLLlhhhllhhhhhhhhhhhhhhl
Query GAVQGIrwhgldeakkielkkfhqsle   82
ident                            
Sbjct RIISQQ....................k   62
DSSP  HHHHHH....................l


No 13: 1Q1VA  MOLECULE: DEK PROTEIN;                                               

DSSP  .....llllllllLLLHHHHHHHllLLLHHhHHLLHHHHHHHHHHHHLL.....llLHHH
Query .....nlselpniGKVLEQDLIKagIKTPVeLKDVGSKEAFLRIWENDS.....svCXSE   50
ident                 |     |        |  |  |       ||             
Sbjct deplikklkkpptDEELKETIKK.lLASAN.LEEVTMKQICKKVYENYPtydlterKDFI   58
DSSP  lllllllllllllHHHHHHHHHH.hHLLLL.HHHLLHHHHHHHHHHHLLlllllhhHHHH


DSSP  HHHHHHHHLLLlhhhllhhhhhhhhhhhhhhl
Query LYALEGAVQGIrwhgldeakkielkkfhqsle   82
ident                                 
Sbjct KTTVKELISLE....................h   70
DSSP  HHHHHHHHHLL....................l


No 14: 1NHAA  MOLECULE: TRANSCRIPTION INITIATION FACTOR IIF, ALPHA                 

DSSP  lllllllllllhhhhhhhlllllhhhhhllhhHHHHHHHHHHLlLLLHHHHHHHHHhHLL
Query nlselpnigkvleqdlikagiktpvelkdvgsKEAFLRIWENDsSVCXSELYALEGaVQG   60
ident                                   |  |            |         
Sbjct ...........................dvqvtEDAVRRYLTRK.PMTTKDLLKKFQ.TKK   31
DSSP  ...........................lllllHHHHHHHHHHL.LLLHHHHHHHLL.LLL


DSSP  LlhhHLLHHHHHHHHHHHHHHL................
Query IrwhGLDEAKKIELKKFHQSLE................   82
ident        |     |      |                 
Sbjct T..gLSSEQTVNVLAQILKRLNperkmindkmhfslke   67
DSSP  L..lLLHHHHHHHHHHHHHHHLleeeeelleeeeelll


No 15: 1K78A  MOLECULE: PAIRED BOX PROTEIN PAX5;                                   

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct gvnqlggvfvngrplpdvvrqrivelahqgvrpcdisrqlrvshgcvskilgryyetgsi   60
DSSP  llllllllllllllllhhhhhhhhhhhhllllhhhhhhhhlllhhhhhhhhhhhhhhlll


DSSP  .....lllllllLLLLHHHHHHhllLLLHHHhhLLHHHHHHHHHHHHL...LLLLhhHHH
Query .....nlselpnIGKVLEQDLIkagIKTPVElkDVGSKEAFLRIWEND...SSVCxsELY   52
ident                           |           |   |                 
Sbjct kpgviggskpkvATPKVVEKIA..eYKRQNP..TMFAWEIRDRLLAERvcdNDTV.pSVS  115
DSSP  llllllllllllLLHHHHHHHH..hHHHHLL..LLLHHHHHHHHHHLLlllLLLL.lLHH


DSSP  HHHHHHLLllhhhllhhhhhhhhhhhhhhl
Query ALEGAVQGirwhgldeakkielkkfhqsle   82
ident                               
Sbjct SINRIIRT.....................k  124
DSSP  HHHHHHHL.....................l


No 16: 2D32A  MOLECULE: GLUTAMATE--CYSTEINE LIGASE;                                

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct mipdvsqalawlekhpqalkgiqrgleretlrvnadgtlattghpealgsalthkwittd   60
DSSP  lllllhhhhhhhhhlhhhhllleeeeeeeeeeellllllllllllhhhlllllllleeel


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct faeallefitpvdgdiehmltfmrdlhrytarnmgdermwplsmpsyiaegqdielaqyg  120
DSSP  lllleeeeellllllhhhhhhhhhhhhhhhhlllllleelllllllllllhhhlllllll


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct tsntgrfktlyreglknrygalmqtisgvhynfslpmafwqaksgadakekisagyfrvi  180
DSSP  llhhhhhhhhhhhhhhhhhllhhhhlleeeeeeellhhhhhllllhhhhhhhhhhhhhhh


DSSP  .......LLLLLL...............................................
Query .......NLSELP...............................................    6
ident                                                             
Sbjct rnyyrfgWVIPYLfgaspaisssfltslpfektesgmyylpyatslrlsdlgytnksqsn  240
DSSP  hhhhhhlLHHHHHhlllleeehhhlllllleelllleeellllllhhhlllllllllhhh


DSSP  ............................................................
Query ............................................................    6
ident                                                             
Sbjct lgitfndlyeyvaglkqaiktpseeyakigiekdgkrlqinsnvlqienelyapirpkrv  300
DSSP  hllllllhhhhhhhhhhhhhlllhhhhhhllllllllllllllllllhhhlllleeeell


DSSP  ..................................llLLLHHHHHHHLL............
Query ..................................niGKVLEQDLIKAG............   20
ident                                       |   ||                
Sbjct trsgespsdallrggieyievrsldinpfspigvdeQQVRFLDLFMVWcaladapemsss  360
DSSP  llllllhhhhhhhhllleeeeeeeellllllllllhHHHHHHHHHHHHhhhlllllllhh


DSSP  ...............................lllhHHHHlLHHHHHHHHHHHHL....LL
Query ...............................iktpVELKdVGSKEAFLRIWEND....SS   45
ident                                       |              |      
Sbjct elactrvnwnrvilegrkpgltlgigcetaqfplpQVGK.DLFRDLKRVAQTLDsingGE  419
DSSP  hhhhhhhhhhhhhhhlllllleelllllllleehhHHHH.HHHHHHHHHHHHHHhhhlLL


DSSP  LLhHHHHHHHHHHLLL............................................
Query VCxSELYALEGAVQGI............................................   61
ident         |                                                   
Sbjct AYqKVCDELVACFDNPdltfsarilrsmidtgiggtgkafaeayrnllreepleilreed  479
DSSP  HHhHHHHHHHHHHHLHhhlhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlllllllhhh


DSSP  ..........lhhhllhhhhhhhhhhhhhhl
Query ..........rwhgldeakkielkkfhqsle   82
ident                                
Sbjct fvaereaserrqqemeaadtepfavwlekha  510
DSSP  hhhhhhhhhhhhhhhhhhllllhhhhhhlll


No 17: 1T98A  MOLECULE: CHROMOSOME PARTITION PROTEIN MUKF;                         

DSSP  lllllllllllhhhhhhhlllllhhhhhlLHHHHHHHHHHHHL..lLLLHHHHHHHHHHH
Query nlselpnigkvleqdlikagiktpvelkdVGSKEAFLRIWEND..sSVCXSELYALEGAV   58
ident                                   |                ||      |
Sbjct ........vpelvawarkndfsislpvdrLSFLLAVATLNGERldgEXSEGELVDAFRHV   52
DSSP  ........llhhhhhhhhhllleeelhhhHHHHHHHHHHHHLLlllLLLHHHHHHHHHHH


DSSP  LL...llhhHLLHHHHHHHHHH..hHHHL...............................
Query QG...irwhGLDEAKKIELKKF..hQSLE...............................   82
ident                            |                                
Sbjct SDafeqtseTIGVRANNAINDXvrqRLLNrftiyrltplgigitdyyirqrefstlrlsx  112
DSSP  HHhllllllLHHHHHHHHHHHHhhhLLEEellleeelhhhhhhhhhhhllllllhhhhhh


DSSP  ............................................................
Query ............................................................   82
ident                                                             
Sbjct qlsivagelkraadaaeeggdefhwhrnvyaplkysvaeifdsidltqrlxdeqqqqvkd  172
DSSP  hhhhhhhhhhhhhhhhhllllhhhhhhhlhhhhhhlhhhhhhhhhhhhhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................   82
ident                                                             
Sbjct diaqllnkdwraaisscelllsetsgtlrelqdtleaagdklqanllriqdatxthddlh  232
DSSP  hhhhhhhhlhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlllllh


DSSP  ..................................
Query ..................................   82
ident                                   
Sbjct fvdrlvfdlqskldriiswgqqsidlwigydrhv  266
DSSP  hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhll


No 18: 2V75A  MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2;           

DSSP  ...LLLLLL...........lllLLHHHHHhhlllLLHHHhhLLHHHHHHHHHHHHLLLL
Query ...NLSELP...........nigKVLEQDLikagiKTPVElkDVGSKEAFLRIWENDSSV   46
ident    ||                  |              |                   ||
Sbjct yteNLKVIVaeklagipnfnediKYVAEYI....vLLIVN..GGTVESVVDELASLFDSV   54
DSSP  lhhHHHHHHhhhhlllllllllhHHHHHHH....hHHHHL..LLLHHHHHHHHHHHLLLL


DSSP  L.HHHHHHHHHHHLLllhhhllhhhhhhhhhhhhhhl
Query C.XSELYALEGAVQGirwhgldeakkielkkfhqsle   82
ident            |                         
Sbjct SrDTLANVVQTAFFA..lealqqgesaenivskirmm   89
DSSP  LhHHHHHHHHHHHHH..hhhhhllllhhhhhhhhhhl


No 19: 2FUG2  MOLECULE: NADH-QUINONE OXIDOREDUCTASE CHAIN 1;                       

DSSP  lllllllllllhhhhhhhlllllhhhhhllhhhHHHHHHHHHLL....lLLHHHHHHHHH
Query nlselpnigkvleqdlikagiktpvelkdvgskEAFLRIWENDS....sVCXSELYALEG   56
ident                                                       |     
Sbjct ...........................ffddkqDFLEETFAKYPpegrrAAIMPLLRRVQ   33
DSSP  ...........................lllllhHHHHHHHHLLLlllhhHHHHHHHHHHH


DSSP  HHLLLlhhhLLHHHHHHHHHHHHH....................................
Query AVQGIrwhgLDEAKKIELKKFHQS....................................   80
ident    |            |                                           
Sbjct QEEGW....IRPERIEEIARLVGTtptevmgvasfysyyqfvptgkyhlqvcatlsckla   89
DSSP  HHHLL....LLHHHHHHHHHHHLLlhhhhhhhhhhllllllllllleeeeeellhhhhll


DSSP  ............................................................
Query ............................................................   80
ident                                                             
Sbjct gaeelwdyltetlgigpgevtpdglfsvqkveclgschtapviqvndepyvecvtrarle  149
DSSP  lhhhhhhhhhhhhlllllllllllleeeeeellllllllllleelllllllllllhhhhh


DSSP  ...........................hl
Query ...........................le   82
ident                              
Sbjct allaglragkrleeielpgkcghhvheve  178
DSSP  hhhhhhhllllhhhlllllllllllllll


No 20: 2DOAA  MOLECULE: RNA POLYMERASE II ELONGATION FACTOR ELL;                   

DSSP  lllllllllllhhhhhhhlllllhHHHHLLHHHHHHHHHHHHLlLLLHHHHHHHHHHHLl
Query nlselpnigkvleqdlikagiktpVELKDVGSKEAFLRIWENDsSVCXSELYALEGAVQg   60
ident                                     |            ||         
Sbjct ...................gssgsSGVSQRPFRDRVLHLLALR.PYRKAELLLRLQKDG.   39
DSSP  ...................lllllLLLLLLLHHHHHHHHHHHL.LEEHHHHHHHHHHHL.


DSSP  llhhhLLHHHHHHHHHHHHHHL......................................
Query irwhgLDEAKKIELKKFHQSLE......................................   82
ident      |  | |  |    |                                         
Sbjct .....LTQADKDALDGLLQQVAnmsakdgtctlqdcmykdvqkdwpgysegdqqllkrvl   94
DSSP  .....LLHHHHHHHHHHHHHLLeellllleeellllhhhhllllllllllhhhhhhhhhh


DSSP  ..........
Query ..........   82
ident           
Sbjct vrklsgpssg  104
DSSP  hhhlllllll


No 21: 1UN8A  MOLECULE: DIHYDROXYACETONE KINASE;                                   

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct msqfffnqrthlvsdvidgaiiaspwnnlarlesdpairivvrrdlnknnvavisgggsg   60
DSSP  llllllllhhhhhhhhhhhhhhlllllleeeellllllleeeelllllllleeeeeeeel


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct hepahvgfigkgmltaavcgdvfaspsvdavltaiqavtgeagcllivknytgdrlnfgl  120
DSSP  lllllhhhllllllleeeeeeelllllhhhhhhhhhhhllllleeeeeellhhhhhhhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct aaekarrlgynvemlivgddislpdnkhprgiagtilvhkiagyfaergynlatvlreaq  180
DSSP  hhhhhhhlllleeeeeelllllllllllllllllhhhhhhhhhhhhhllllhhhhhhhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct yaasntfslgvalsschlpqetdaaprhhpghaelgmgihgepgasvidtqnsaqvvnlm  240
DSSP  hhhhleeeeeeeeelllllllllllllllllleeelllllllllleeellllhhhhhhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct vdkllaalpetgrlavminnlggvsvaemaiitrelassplhsridwligpaslvtaldm  300
DSSP  hhhhhhhlllllleeeeeeelllllhhhhhhhhhhhhllllhhheeeeeeeellllllll


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct kgfsltaivleesiekalltevetsnwptpvppreitcvvsshasarvefqpsanalvag  360
DSSP  eeeeeeeeellllhhhhhhlllllllllllllllllleellllllllllllllllhhhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct ivelvtatlsdlethlnaldakvgdgdtgstfaaaareiasllhrqqlplnnlatlfali  420
DSSP  hhhhhhhhhhhlhhhhhhhhhllllllhhhhhhhhhhhhhhhhhllllllllhhhhhhhh


DSSP  .........................lllllllllllhhhhhhhlllllhHHHHL...lHH
Query .........................nlselpnigkvleqdlikagiktpVELKD...vGS   32
ident                                                      |      
Sbjct gerltvvmggssgvlmsifftaagqkleqganvvealntglaqmkfyggADEGDrtmiDA  480
DSSP  hhhhhhhllhhhhhhhhhhhhhhhhhhhllllhhhhhhhhhhhhhhhhlLLLLLlllhHH


DSSP  HHHHHHHHHHLLL...LLHHHHHHHHHHHLLL.......lhhHLLHhhhhHHHHHHHHHL
Query KEAFLRIWENDSS...VCXSELYALEGAVQGI.......rwhGLDEakkiELKKFHQSLE   82
ident     |                  |                    |      |      | 
Sbjct LQPALTSLLAQPKnlqAAFDAAQAGAERTCLSskanaesllgNMDP.gaqRLAMVFKALA  539
DSSP  HHHHHHHHHHLLLlhhHHHHHHHHHHHHHHHLllllllllhhHLLH.hhhHHHHHHHHHH


DSSP  ...
Query ...   82
ident    
Sbjct ese  542
DSSP  lll


No 22: 1WERA  MOLECULE: P120GAP;                                                   

DSSP  ....lllLLLLLL....LLHHHHHHHLL................................
Query ....nlsELPNIG....KVLEQDLIKAG................................   20
ident        |               |                                    
Sbjct mpeeeysEFKELIlqkeLHVVYALSHVCgqdrtllasillriflhekleslllctlndre   60
DSSP  llhhhhhHHHHHHllllLHHHHHHHHHLlllhhhhhhhhhhhhhhlllhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................   20
ident                                                             
Sbjct ismedeattlfrattlastlmeqymkatatqfvhhalkdsilkimeskqscelspsklek  120
DSSP  hhhlllhhhllllllhhhhhhhhhhhhhlhhhhhhhhhhhhhhhhhllllllllhhhlll


DSSP  ............................................................
Query ............................................................   20
ident                                                             
Sbjct nedvntnlthllnilselvekifmaseilpptlryiygclqksvqhkwptnttmrtrvvs  180
DSSP  lllhhhhhhhhhhhhhhhhhhhhllhhhllhhhhhhhhhhhhhhhhhllllllhhhhhhh


DSSP  ............................................................
Query ............................................................   20
ident                                                             
Sbjct gfvflrlicpailnprmfniisdspspiaartlilvaksvqnlanlvefgakepymegvn  240
DSSP  hhhllllhhhhhhlhhhhllllllllhhhhhhhhhhhhhhhhhhlllllllllhhhhhhh


DSSP  ......................................llLHHHHHLLHhHHHHHHHHhH
Query ......................................ikTPVELKDVGsKEAFLRIWeN   42
ident                                                    |        
Sbjct pfiksnkhrmimfldelgnvpelpdttehsrtdlsrdlaaLHEICVAHS.DELRTLSN.E  298
DSSP  hhhhhhhhhhhhhhhhhlllllllllllllllllhhhhhhHHHHHHHLH.HHHHHHHL.L


DSSP  LLLLLHHHHHHHHHHHLLllhhhllhhhhhhhhhhhhhhl
Query DSSVCXSELYALEGAVQGirwhgldeakkielkkfhqsle   82
ident            |                            
Sbjct RGAQQHVLKKLLAITELL..............qqkqnqyt  324
DSSP  LLLHHHHHHHHHHHHHHH..............hhhhhlll


No 23: 1P8CA  MOLECULE: CONSERVED HYPOTHETICAL PROTEIN;                            

DSSP  ....................lllllllllllhHHHHHhlllllhhhhHLLH.......hH
Query ....................nlselpnigkvlEQDLIkagiktpvelKDVG.......sK   33
ident                                                             
Sbjct rrelnekvlsrgtlntkrffnldsavyrpgklDVKTK.....elmglVASTvlrcddciR   55
DSSP  lllhhhhhhhhllhhhhhhhhhhhhlllllllLHHHH.....hhhhhHHHHhlllhhhhH


DSSP  HHHHHHHHHLllLLHHHHHHHHHHHLLLlhhhlLHHHHHHHHHHHHHHL..........
Query EAFLRIWENDssVCXSELYALEGAVQGIrwhglDEAKKIELKKFHQSLE..........   82
ident     |           |                          |   |           
Sbjct YHLVRCVQEG..ASDEEIFEALDIALVV.ggsiVIPHLRRAVGFLEELRemekngetis  111
DSSP  HHHHHHHLLL..LLHHHHHHHHHHHHHH.hlhhHHHHHHHHHHHHHHHHllllllllll