DaliLite: Structural Neighbours

Query: 2R1FA MOLECULE: PREDICTED AMINODEOXYCHORISMATE LYASE;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2Q24-A  2.2  4.5   72   173    4   PUTATIVE TETR FAMILY TRANSCRIPTIONAL REGULATOR;            "         
   2:  2NX4-A  2.1  4.3   71   194    6   TRANSCRIPTIONAL REGULATOR, TETR FAMILY PROTEIN;            "         
   3:  2HKU-A  2.1  5.7   85   191    7   A PUTATIVE TRANSCRIPTIONAL REGULATOR;                      "         
   4:  1EA7-A  2.1  4.2   71   310    6   SERINE PROTEASE;                                           "         
   5:  2GEN-A  2.0  3.8   79   188   14   PROBABLE TRANSCRIPTIONAL REGULATOR;                        "         
-

No 1: 2Q24A  MOLECULE: PUTATIVE TETR FAMILY TRANSCRIPTIONAL REGULATOR;            

DSSP  .....................................................lllleee
Query .....................................................hfkagty    7
ident                                                             
Sbjct nrdkilaaavrvfseegldahleriareagvgsgtlyrnfptrealieaayrnevarlcd   60
DSSP  lhhhhhhhhhhhhhhhlllllhhhhhhhllllhhhhhhhlllhhhhhhhhhhhhhhhhhh


DSSP  eelllllhhhhhhhhhhllllleeeelLLLLLHHHHHHHHHLLlllllllllllhhhhhh
Query rftpqxtvrexlkllesgkeaqfplrlVEGXRLSDYLKQLREApyikhtlsddkyatvaq   67
ident                                                             
Sbjct svpgllaelppaealrawtrrfidyatAKLGXADALRAVVASG.................  103
DSSP  lhhhhhhhllhhhhhhhhhhhhhhhhhHHHHLHHHHHHHHHLL.................


DSSP  hhllllllllllllllleeeelllllhhhHHHHhhHHHHHHHHHHHHLL.......lLLL
Query alelenpewiegwfwpdtwxytanttdvaLLKRahKKXVKAVDSAWEGR.......aDGL  120
ident                                                             
Sbjct ............................gDPYG..DSRQLIQSALTALXdaaaaageIRS  133
DSSP  ............................lLLLL..LHHHHHHHHHHHHHhhhhhlllLLL


DSSP  LLlLHHHHHHHHHHHHHHL...lLHHHHHHHHHHHHHHHHhllllllhhhhhhhhhhhll
Query PYkDKNQLVTXASIIEKET...aVASERDQVASVFINRLRigxrlqtdptviygxgeryn  177
ident               |                       ||                    
Sbjct DI.RSTDXFAALAGIALTSsrpdQRAQAERLLDLVLDGLR....................  172
DSSP  LL.LHHHHHHHHHHHHHHHllhhHHHHHHHHHHHHHHHLL....................


DSSP  llllhhhhhllllllllllllllllllllllhhhhhhhhlllllllleeeellllleeee
Query gklsradletptayntytitglppgaiatpgadslkaaahpaktpylyfvadgkgghtfn  237
ident                                                             
Sbjct ............................................................  172
DSSP  ............................................................


DSSP  llhhhhhhhhhhhhhhhhhhhll
Query tnlashnksvqdylkvlkeknaq  260
ident                        
Sbjct ......................p  173
DSSP  ......................l


No 2: 2NX4A  MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY PROTEIN;            

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct gvpklvdhderrrsitaaawrliaargieaanmrdiateagytngalshyfagkdeilrt   60
DSSP  lllhhhhhhhhhhhhhhhhhhhhhhhllllllhhhhhhhhlllhhhhhhhlllhhhhhhh


DSSP  ...........lllleeeeelllllhhhhhhhhhhllllleeeelLLLLLHHHHHHhhhl
Query ...........hfkagtyrftpqxtvrexlkllesgkeaqfplrlVEGXRLSDYLKqlre   49
ident                                                             
Sbjct syehiseatdrriaealgdatgldalrilcrevmpineeqllearIAASLWPRAMY....  116
DSSP  hhhhhhhhhhhhhhhhhllllhhhhhhhhhhhhllllhhhhhhhhHHHHHHHHHLL....


DSSP  llllllllllllhhhhhhhhllllllllllllllleeeelllllHHHHHHHHHHHHHHHH
Query apyikhtlsddkyatvaqalelenpewiegwfwpdtwxytanttDVALLKRAHKKXVKAV  109
ident                                             |               
Sbjct ............................................DEQMAATNRRTMDNWR  132
DSSP  ............................................LLHHHHHHHHHHHHHH


DSSP  HHHHHLL.........llllllLLHHHHHHHHHHHHHHL.LLHHHH.HHHHHHHHHHHHH
Query DSAWEGR.........adglpyKDKNQLVTXASIIEKET.AVASER.DQVASVFINRLRI  158
ident                           ||                |               
Sbjct EQMAIFLeqareegsvgdidvtIVVEQLLNMMMGMQILGvLTPGETsSERQLEMLEQFVA  192
DSSP  HHHHHHHhhhhhhlllllllhhHHHHHHHHHHHHHHHHHhHLLLLLlHHHHHHHHHHHHH


DSSP  Llllllhhhhhhhhhhhllllllhhhhhllllllllllllllllllllllhhhhhhhhll
Query Gxrlqtdptviygxgeryngklsradletptayntytitglppgaiatpgadslkaaahp  218
ident                                                             
Sbjct A...........................................................  193
DSSP  L...........................................................


DSSP  lllllleeeellllleeeellhhhhhhhhhhhhhhhhhhhll
Query aktpylyfvadgkgghtfntnlashnksvqdylkvlkeknaq  260
ident                                           
Sbjct .........................................l  194
DSSP  .........................................l


No 3: 2HKUA  MOLECULE: A PUTATIVE TRANSCRIPTIONAL REGULATOR;                      

DSSP  ............................llLLEEeeelllllhhhhhhhhhhLLLL...L
Query ............................hfKAGTyrftpqxtvrexlkllesGKEA...Q   29
ident                                |                            
Sbjct qtrdalftaatelflehgegvpitqicaaaGAHP..................NQVTyyyG   42
DSSP  lhhhhhhhhhhhhhhhhlllllhhhhhhhhLLLH..................HHHHhhhL


DSSP  EEE...........................................elLLLLL...HHHH
Query FPL...........................................rlVEGXR...LSDY   43
ident                                                             
Sbjct SKErlfvevacaavlragkraeddaataetvgdyteklvgsllgpgapSVELFtsaXLXT  102
DSSP  LHHhhhhhhhhhhhhhhhhhhhhhhhllllhhhhhhhhhhhhhlllhhHHHHHhhhHHHL


DSSP  HhhhhlllllllllllllhhhhhhhhllllllllllllllleeeelllllHHHHHHHHHH
Query LkqlreapyikhtlsddkyatvaqalelenpewiegwfwpdtwxytanttDVALLKRAHK  103
ident                                                      |      
Sbjct G................................................rRSELRDLITD  114
DSSP  L................................................lLHHHHHHHHH


DSSP  HHHHHHHHHHHL..LLLL........lllLLHHHHHHHHHHHHHHL...LLHHHH.HHHH
Query KXVKAVDSAWEG..RADG........lpyKDKNQLVTXASIIEKET...AVASER.DQVA  149
ident        |      |                                            |
Sbjct TLRTLHSSGEVAliRTLXrtgwqlragidVESKAFWSAIFGLVIQKtatGESFGYsLEEA  174
DSSP  HHHHHHHHHHHLhhHHHHhllllllllhhHHHHHHHHHHHHHHHHHhhlLLLLLLlHHHH


DSSP  HHHHHHHHHLlllllhhhhhhhhhhhllllllhhhhhllllllllllllllllllllllh
Query SVFINRLRIGxrlqtdptviygxgeryngklsradletptayntytitglppgaiatpga  209
ident    |                                                        
Sbjct VAVIFANLQI..................................................  184
DSSP  HHHHHHHHLL..................................................


DSSP  hhhhhhhlllllllleeeellllleeeellhhhhhhhhhhhhhhhhhhhll
Query dslkaaahpaktpylyfvadgkgghtfntnlashnksvqdylkvlkeknaq  260
ident                                                    
Sbjct ............................................petvrnt  191
DSSP  ............................................lhhhhhl


No 4: 1EA7A  MOLECULE: SERINE PROTEASE;                                           

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct rasqqipwgikaiynndtltsttggsginiavldtgvntshpdlvnnveqckdftgattp   60
DSSP  lllllllhhhhhhhlllllllllllllleeeeeellllllllllllleeeeeelllllll


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct innsctdrnghgthvagtaladggsdqagiygvapdadlwaykvlldsgsgysddiaaai  120
DSSP  eellllllllhhhhhhhhhhllllllllllllllllleeeeeelllllllllhhhhhhhh


DSSP  .....lllleeeeelllllhhhhhhhhhhllllleeeellllllhhhhHHHHhlllllll
Query .....hfkagtyrftpqxtvrexlkllesgkeaqfplrlvegxrlsdyLKQLreapyikh   55
ident                                                             
Sbjct rhaadqatatgtktiismslgssannslissavnyayskgvlivaaagNSGY........  172
DSSP  hhhhhhhhhhllleeeeellllllllhhhhhhhhhhhhllleeeeellLLLL........


DSSP  lllLLLHHHHHhhhlllLLLLL.....................................L
Query tlsDDKYATVAqaleleNPEWI.....................................E   78
ident           |                                                |
Sbjct .sqGTIGYPGA.....lPNAIAvaalenvqqngtyrvadyssrgyistagdyviqegdiE  226
DSSP  .llLLLLLLLL.....lLLLEEeeeeeeeeelleeeellllllllllllllllllllllL


DSSP  LLL...llleeeelllllhhHHHHHHHHHHHHHHHHHHHLLLLlllLLLHHHHHHHHHHH
Query GWF...wpdtwxytanttdvALLKRAHKKXVKAVDSAWEGRADglpYKDKNQLVTXASII  135
ident                          |           |                      
Sbjct ISApgssvystwynggyntiSGTSMATPHVSGLAAKIWAENPS.lsNTQLRSNLQERAKS  285
DSSP  EEEellleeeellllleeeeLLHHHHHHHHHHHHHHHHHHLLL.llHHHHHHHHHHHHHL


DSSP  HHhlllhhhhhhhhhhhhhhhhhlllllLHHHhhhhhhhhllllllhhhhhlllllllll
Query EKetavaserdqvasvfinrlrigxrlqTDPTviygxgeryngklsradletptayntyt  195
ident                                                             
Sbjct VD...................ikggygaAIGD............................  298
DSSP  LL...................lllllllLLLL............................


DSSP  llllllllLLLLLHHhhhhhhlllllllleeeellllleeeellhhhhhhhhhhhhhhhh
Query itglppgaIATPGADslkaaahpaktpylyfvadgkgghtfntnlashnksvqdylkvlk  255
ident                                                             
Sbjct ...dyasgFGFARVQ.............................................  310
DSSP  ...lllllLLLLLLL.............................................


DSSP  hhhll
Query eknaq  260
ident      
Sbjct .....  310
DSSP  .....


No 5: 2GENA  MOLECULE: PROBABLE TRANSCRIPTIONAL REGULATOR;                        

DSSP  .....................lllleeeeelllllhhhhhhhhhhllllleeEELL....
Query .....................hfkagtyrftpqxtvrexlkllesgkeaqfpLRLV....   35
ident                                                     |       
Sbjct rkdeilqaalacfsehgvdattiexirdrsgasigslyhhfgnkerihgelyLAGIgqya   60
DSSP  lhhhhhhhhhhhhhhhllllllhhhhhhhhlllhhhhhhhlllhhhhhhhhhHHHHhhhh


DSSP  ..................................lllLHHHHHHHHHLllllllllllll
Query ..................................egxRLSDYLKQLREapyikhtlsddk   61
ident                                       |                     
Sbjct alleagfararsaeetvrllvtsyidwvvanpdwarfILHSRGRVEAG............  108
DSSP  hhhhhhhhhlllhhhhhhhhhhhhhhhhhhlhhhhhhHHHHHHHHHHL............


DSSP  hhhhhhhhllllllllllllllleeeelllllHHHHHHHHHHHHHHHHHHHHHLLL..LL
Query yatvaqalelenpewiegwfwpdtwxytanttDVALLKRAHKKXVKAVDSAWEGRA..DG  119
ident                                     |             |  |      
Sbjct ...............................eLGERLRADNQAHFARIHAALAGYRaeGL  137
DSSP  ...............................lLHHHHHHHHHHHHHHHHHHHHHHHhlLL


DSSP  LLLLLHHHHHHHHHHHHHHLL...........LHHHHHHHHHHHHHHHHhllllllhhhh
Query LPYKDKNQLVTXASIIEKETA...........VASERDQVASVFINRLRigxrlqtdptv  168
ident                     |            |  |   | |     |           
Sbjct FREXPDDCFASVVIGPAHDLArqwlagrtrvaLADCRELLAQVAWDSVR...........  186
DSSP  LLLLLHHHHHHHHHHHHHHHHhhhhlllllllHHHHHHHHHHHHHHHHL...........


DSSP  hhhhhhhllllllhhhhhllllllllllllllllllllllhhhhhhhhlllllllleeee
Query iygxgeryngklsradletptayntytitglppgaiatpgadslkaaahpaktpylyfva  228
ident                                                             
Sbjct ............................................................  186
DSSP  ............................................................


DSSP  llllleeeellhhhhhhhhhhhhhhhhhhhll
Query dgkgghtfntnlashnksvqdylkvlkeknaq  260
ident                                 
Sbjct ..............................aa  188
DSSP  ..............................ll