DaliLite: Structural Neighbours

Query: 2QZBB MOLECULE: UNCHARACTERIZED PROTEIN YFEY;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2B5R-C  3.1  6.6   58   165    5   BETA-LACTAMASE TEM;                                        "         
   2:  1RI6-A  3.0  2.9   46   333    4   PUTATIVE ISOMERASE YBHE;                                   "         
   3:  2HJW-A  2.4  2.9   68   494    9   ACETYL-COA CARBOXYLASE 2;                                  "         
   4:  1I3R-B  2.4  6.8   54   216    7   H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K               "         
   5:  2V1L-A  2.3  3.8   52   129    0   HYPOTHETICAL PROTEIN;                                      "         
   6:  2I8D-A  2.2  3.9   71   121    6   UNCHARACTERIZED CONSERVED PROTEIN OF COG5646;              "         
   7:  1VR8-A  2.2  3.4   70   135    7   GTP BINDING REGULATOR;                                     "         
   8:  2GU3-A  2.0  8.4   48   128   15   YPMB PROTEIN;                                              "         
-

No 1: 2B5RC  MOLECULE: BETA-LACTAMASE TEM;                                        

DSSP  ...lleelleelleellllllhhhhhhhlleEEEE......eeeeLLEEE....eeeeee
Query ...tkvseqgvgeltastplqeqaiadalyrLRSG......mktaNGNVV....rffevm   47
ident                                                             
Sbjct agvmtgakftqiqfgmtrqqvldiagaenceTGGSfgdsihcrghAAGDYyayatfgfts   60
DSSP  lllllhhhhhhllllllhhhhhhhhlhhheeLLHHhllleeeellLLLLLlleeeeeell


DSSP  elleeeeeeeellleeeeeelllllllLLLLLLLLLHHHHLL...llllLEEELL.....
Query kgdnvamvingdgtisridvldsdipaDTGVKIGTPFSDLYS...kafgNCQKAD.....   99
ident                               |  |                          
Sbjct aaadakvdsksqekllapsaptltlakFNQVTVGMTRAQVLAtvgqgscTTWSEYypayp  120
DSSP  lllllleeeeeeelllllllllllhhhHHHLLLLLLHHHHHHhhlllleEEEEEElllll


DSSP  ..llLLEEEELLL..........lLLEEEEEELlllllllllllhhhhllLEEEEEEEEL
Query ..gnRAVECKAEG..........sQHISYQFSGewrgpeglmpsddtlknWKVSKIIWRR  147
ident                               |                             
Sbjct stagVTLSLSCFDvdgysstgfyrGSAHLWFTD.................GVLQGKRQWD  163
DSSP  llllLEEEEEEELlllllllllllLEEEEEEEL.................LEEEEEEEEL


DSSP  ..
Query ..  147
ident   
Sbjct lv  165
DSSP  ll


No 2: 1RI6A  MOLECULE: PUTATIVE ISOMERASE YBHE;                                   

DSSP  lleelleelleellllllhhhhhhhlleeeeeeeeelleeeeeeeeeelleeeeeeeell
Query tkvseqgvgeltastplqeqaiadalyrlrsgmktangnvvrffevmkgdnvamvingdg   60
ident                                                             
Sbjct ....................................................slkqtvyi    8
DSSP  ....................................................lleeeeee


DSSP  leeeeeellllllllllllllllhHHHLllllLLEEELLLLLLEEEELLLLlLEEEEEEL
Query tisridvldsdipadtgvkigtpfSDLYskafGNCQKADGNRAVECKAEGSqHISYQFSG  120
ident                          |               |                  
Sbjct aspesqqihvwnlnhegaltltqvVDVP.gqvQPMVVSPDKRYLYVGVRPE.FRVLAYRI   66
DSSP  eehhhleeeeeeellllleeeeeeEELL.lllLLEEELLLLLEEEEEELLL.LEEEEEEE


DSSP  LLLLlllllllhhhhlLLEEEEEEEEL.................................
Query EWRGpeglmpsddtlkNWKVSKIIWRR.................................  147
ident                                                             
Sbjct APDD...........gALTFAAESALPgslthistdhqgqfvfvgsynagnvsvtrledg  115
DSSP  LLLL...........lLEEEEEEEELLlllleeeellllleeeeeelllleeeeeeeell


DSSP  ............................................................
Query ............................................................  147
ident                                                             
Sbjct lpvgvvdvvegldgchsanispdnrtlwvpalkqdriclftvsddghlvaqdpaevttve  175
DSSP  eeeeeeeeellllllllleellllleeeeeehhhleeeeeeellllleeeeeeeeeelll


DSSP  ............................................................
Query ............................................................  147
ident                                                             
Sbjct gagprhmvfhpneqyaycvnelnssvdvwelkdphgniecvqtldmmpenfsdtrwaadi  235
DSSP  llleeeeeellllleeeeeelllleeeeeelllllllleeeeeeellllllllllleeee


DSSP  ............................................................
Query ............................................................  147
ident                                                             
Sbjct hitpdgrhlyacdrtaslitvfsvsedgsvlskegfqptetqprgfnvdhsgkyliaagq  295
DSSP  eellllleeeeeelllleeeeeeelllllleeeeeeeellllllleeellllleeeeell


DSSP  ......................................
Query ......................................  147
ident                                       
Sbjct kshhisvyeivgeqgllhekgryavgqgpmwvvvnahe  333
DSSP  llleeeeeeeelllleeeeeeeeelllllleeeeeeel


No 3: 2HJWA  MOLECULE: ACETYL-COA CARBOXYLASE 2;                                  

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct hrdftvaspaefvtrfggdrviekvlianngiaavkcmrsirrwayemfrnerairfvvm   60
DSSP  llllllllhhhhhhhlllllllleeeelllhhhhhhhhhhhhhhhhhhhlllllleeeee


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct vtpedlkanaeyikmadhyvpvpggpnnnnyanvelivdiakripvqavwagwghasenp  120
DSSP  elhhhhhlllhhhhhlleeeelllllhhhllllhhhhhhhhhhlllleeellllllllll


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct klpellckngvaflgppseamwalgdkiastvvaqtlqvptlpwsgsgltvewqgkrisv  180
DSSP  hhhhhhhhllleellllhhhhhllllhhhhhhhhhhllllllllllllllllllllllll


DSSP  ..............................................lleelleelleell
Query ..............................................tkvseqgvgeltas   14
ident                                                             
Sbjct pedvydkgcvkdvdegleaaerigfplmikaseggggkgirkaesaedfpilfrqvqsei  240
DSSP  lhhhhlllllllhhhhhhhhhhhllleeeeelllllllleeeelllllhhhhhhhhhhhl


DSSP  llllhhhhhhhlleEEEEEEEE......lLEEEEEEE.EEELLEEEEEEEE.........
Query tplqeqaiadalyrLRSGMKTA......nGNVVRFFE.VMKGDNVAMVING.........   58
ident                                                             
Sbjct pgspiflmklaqhaRHLEVQILadqygnaVSLFGRDCsIQRRHQKIVEEAPatiaplaif  300
DSSP  lllleeeeelllllEEEEEEEEellllleEEEEEEEEeEELLLLEEEEEELlllllhhhh


DSSP  ............................................................
Query ............................................................   58
ident                                                             
Sbjct efmeqcairlaktvgyvsagtveylysqdgsfhflelnprlqvehpctemiadvnlpaaq  360
DSSP  hhhhhhhhhhhhhlllleeeeeeeeellllleeeeeeelllllllhhhhhhhlllhhhhh


DSSP  ......................................lLLEEEEEELlllllllllllL
Query ......................................dGTISRIDVLdsdipadtgvkI   80
ident                                             |              |
Sbjct lqiamgvplhrlkdirllygespwgvtpisfetpsnpplARGHVIAAR...........I  409
DSSP  hhhhllllhhhlhhhhhhlllllllllllllllllllllLLLEEEEEE...........E


DSSP  LLLhhhhllllllleeellllLLEEEELLLLLLEEEEEELlllllllllllhhhhlllee
Query GTPfsdlyskafgncqkadgnRAVECKAEGSQHISYQFSGewrgpeglmpsddtlknwkv  140
ident                         |     |      ||                     
Sbjct TSE................sgTVQELNFRSSKNVWGYFSV..................qf  435
DSSP  ELL................llLEEEELLLLLLLEEEEEEL..................le


DSSP  EEEEEEL....................................................
Query SKIIWRR....................................................  147
ident                                                            
Sbjct GHCFSWGenreeaisnmvvalkelsirgdfrttveylinlletesfqnndidtgwldyl  494
DSSP  EEEEEEEllhhhhhhhhhhhhhhhhhlhhhllllhhhhhhhhlhhhhllllllhhhlll


No 4: 1I3RB  MOLECULE: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K               

DSSP  lleelleelleellllllhHHHHHH....................lLEEEEEEEEE..LL
Query tkvseqgvgeltastplqeQAIADA....................lYRLRSGMKTA..NG   38
ident                                                   |         
Sbjct ............gkkvitaFNEGLKggggslvgggsggggsrpwflEYCKSECHFYngTQ   48
DSSP  ............lllllllLLLLLLllllllllllllllllllleeEEEEEEEEEElhHH


DSSP  EEEEEEEEEELLEEEEEEEELllEEEEEELLLL...........................
Query NVVRFFEVMKGDNVAMVINGDgtISRIDVLDSD...........................   71
ident  |                  |                                       
Sbjct RVRLLVRYFYNLEENLRFDSD..VGEFRAVTELgrpdaenwnsqpefleqkraevdtvcr  106
DSSP  EEEEEEEEEELLEEEEEEELL..LLLEEELLHHhhhhhhhhhllhhhhhhhhhhhhhlhh


DSSP  ..........llllllllllllhhhhllllllleeelllllleeeelllllleeeeeell
Query ..........ipadtgvkigtpfsdlyskafgncqkadgnraveckaegsqhisyqfsge  121
ident                                                             
Sbjct hnyeifdnflvprrveptvtvyptktqplehhnllvcsvsdfypgnievrwfrngkeekt  166
DSSP  hhhhhhllllllllllleeeeeelllllllllleeeeeeeeellllleeeeeelleeell


DSSP  lLLLLL........................llllhhhhllleeeeeeeel
Query wRGPEG........................lmpsddtlknwkvskiiwrr  147
ident      |                                            
Sbjct gIVSTGlvrngdwtfqtlvmletvpqsgevytcqvehpsltdpvtvewka  216
DSSP  lEEELLleellllleeeeeeeellllllleeeeeeellllllleeeeeel


No 5: 2V1LA  MOLECULE: HYPOTHETICAL PROTEIN;                                      

DSSP  lleelleelleellllllhhhhhhhlLEEEEEEE..EELL..EEEEEEEEEEL.....LE
Query tkvseqgvgeltastplqeqaiadalYRLRSGMK..TANG..NVVRFFEVMKG.....DN   51
ident                                                             
Sbjct lfkpthlpiskpfhallanilsehqaEVVMNFRDssYSAEdgGFHPVEIALSQssdgqWC   60
DSSP  llllllllllhhhhhhhhhhhhhhhlLEEEEEELllLLLLllLLLLEEEEEEElllllEE


DSSP  EEEEEEEL.....LLEEEEEELLLlllllllllllllhhhhllllllleeelllllleee
Query VAMVINGD.....GTISRIDVLDSdipadtgvkigtpfsdlyskafgncqkadgnravec  106
ident                                                             
Sbjct IEYITDFAyvfpeLERCLDFDFQR..................................gd   86
DSSP  EEEEEEEEellllEEEEEEEELLL..................................le


DSSP  ellllLLEEEEEE..llllllllllllhhhhllleeeeeeeel
Query kaegsQHISYQFS..gewrgpeglmpsddtlknwkvskiiwrr  147
ident                                            
Sbjct fftayHGWNPIVGnrdarelyqlwesnflayvateafddislt  129
DSSP  eeellLEEEELLLlhhhhhhhhhhhhhhhhhhhllllleeeel


No 6: 2I8DA  MOLECULE: UNCHARACTERIZED CONSERVED PROTEIN OF COG5646;              

DSSP  ..lleelleelleelLLLLlhHHHHHHL......LEEEEEEeeelleeeEEEEEEELLEE
Query ..tkvseqgvgeltaSTPLqeQAIADAL......YRLRSGMktangnvvRFFEVMKGDNV   52
ident                 |                   |                       
Sbjct gslaewyqriptpddLTRV..ESLFANXqaqfpqLKLEFKW........NQPXFTDHGTF   50
DSSP  llhhhhhlllllhhhHHHH..HHHHHHHhhhlllLEEEEEL........LEEEEEELLEE


DSSP  EEEEEELlleEEEEELlLLLL..LLLLllllllhhhhllllllleeelllllleeeelll
Query AMVINGDgtiSRIDVLdSDIP..ADTGvkigtpfsdlyskafgncqkadgnraveckaeg  110
ident     |                                                       
Sbjct IXGFNPSkkhLAVAIE.PQTXtrFIPQ.............................idka   80
DSSP  EEEEEELlleEEEEEL.HHHHhhHHHH.............................hhhh


DSSP  LLLEEEEE.ellllllLLLL..LLHHHHLLL.eeeeeeeel
Query SQHISYQF.sgewrgpEGLM..PSDDTLKNW.kvskiiwrr  147
ident     |                                    
Sbjct GYDHSQIIrfpwhkplDEQLihDLIAYTIDQkkdattfwqr  121
DSSP  LLLEEEEEeeelllllLHHHhhHHHHHHHHHllllllllll


No 7: 1VR8A  MOLECULE: GTP BINDING REGULATOR;                                     

DSSP  lleelLEELleELLLLLLhhHHHHHL.......lEEEEEEEeelleeEEEEEEEELL...
Query tkvseQGVGelTASTPLQeqAIADAL.......yRLRSGMKtangnvVRFFEVMKGD...   50
ident                 |        |                                  
Sbjct kihhhHHHP..PEAYSLD..TAIFVLetrdyrlsDVKEIDS.ygdveXKGKVAVFETeyg   55
DSSP  lllllLLLL..LLLLLHH..HHHHLLllllleeeEEEEEEE.elleeEEEEEEEEEElle


DSSP  EEEEEEEELlleeeeeellllllllllllllllhhhhllllllleeelLLLLLEEEELlL
Query NVAMVINGDgtisridvldsdipadtgvkigtpfsdlyskafgncqkaDGNRAVECKAeG  110
ident  |                                                          
Sbjct PVFLYVYKG............................eeakkiwkklnGRVSIRSVLD.L   86
DSSP  EEEEEEEEL............................llhhhhhhhhhLLLLLEEEEE.L


DSSP  LLLEEEEEEllllllllllllhhhhllleeEEEEEEL.......................
Query SQHISYQFSgewrgpeglmpsddtlknwkvSKIIWRR.......................  147
ident                                   | |                       
Sbjct PNXGKFSTV.................sngkKIVAWWRknwlfivegkngveefvkhvyrv  129
DSSP  LLEEEEEEE.................elleEEEEEEElleeeeeeelllhhhhhhhhhhh


DSSP  ......
Query ......  147
ident       
Sbjct yeexkq  135
DSSP  hhllll


No 8: 2GU3A  MOLECULE: YPMB PROTEIN;                                              

DSSP  lleelleelleellllllhhhhhhhlleeEEEE...........................
Query tkvseqgvgeltastplqeqaiadalyrlRSGM...........................   33
ident                                                             
Sbjct .............................KEEGheaaaaeakketdlahvdqvetfvgke   31
DSSP  .............................LLLLhhhhhhhhhhhlleeeeeeeeeeelll


DSSP  ...................eEELLeeeeeeeeeelleeeeeeeellleeeeeelllllll
Query ...................kTANGnvvrffevmkgdnvamvingdgtisridvldsdipa   74
ident                                                             
Sbjct kyyvvkgtdkkgtalyvwvpADKK.........................akilskeakeg   66
DSSP  eeeeeeeeelllleeeeeeeLLLL.........................llleeeehhhl


DSSP  llllllllLHHH.hllllllLEEELLL..LLLEEEELLL..lLLEEEEEELLllllllll
Query dtgvkigtPFSD.lyskafgNCQKADG..NRAVECKAEG..sQHISYQFSGEwrgpeglm  129
ident            |            |        |        |                 
Sbjct isedkaakIIKDeglvskqkEVHLAREgnVLLWEVTYLDkegQYSLSYVDFT........  118
DSSP  llhhhhhhHHHHllllleeeEEEEEEEllEEEEEEEEELlllLEEEEEEELL........


DSSP  llhhhhllLEEEEEEEEl
Query psddtlknWKVSKIIWRr  147
ident          |  | |   
Sbjct .......tGKILKNITP.  128
DSSP  .......lLLEEEEELL.