DaliLite: Structural Neighbours

Query: 2QZBA MOLECULE: UNCHARACTERIZED PROTEIN YFEY;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2B5R-C  3.9  4.8   80   165    5   BETA-LACTAMASE TEM;                                        "         
   2:  2GU3-A  2.8  3.4   50   128   10   YPMB PROTEIN;                                              "         
   3:  2HJW-A  2.3  3.1   70   494    9   ACETYL-COA CARBOXYLASE 2;                                  "         
   4:  1O0W-A  2.3  2.9   45   238   13   RIBONUCLEASE III;                                          "         
   5:  1Q5F-A  2.2  4.1   82   156    9   PILS;                                                      "         
   6:  1Y7P-A  2.0  6.0   60   212    7   HYPOTHETICAL PROTEIN AF1403;                               "         
   7:  1VR8-A  2.0  4.5   70   135    9   GTP BINDING REGULATOR;                                     "         
   8:  1BXN-I  2.0  5.4   54   129    6   PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE           "         
-

No 1: 2B5RC  MOLECULE: BETA-LACTAMASE TEM;                                        

DSSP  .lleelleeLLLLLLLLLLhhHHHHHLllllEEEEEEeeelleeeEEEEEEELL....EE
Query .tkvseqgvGELTASTPLQeqAIADALdgdyRLRSGMktangnvvRFFEVMKGD....NV   55
ident                   |     |          |                        
Sbjct agvmtgakfTQIQFGMTRQ..QVLDIA.gaeNCETGG.....sfgDSIHCRGHAagdyYA   52
DSSP  lllllhhhhHHLLLLLLHH..HHHHHH.lhhHEELLH.....hhlLLEEEELLLllllLL


DSSP  EEEEEL......LLLLEEEELLLllllllllLLLL....lhhHHLLLLLLLEEElleeee
Query AMVING......GTISRIDVLDSdipadtgvKIGT....pfsDLYSKAFGNCQKaaveck  105
ident                                                  |          
Sbjct YATFGFtsaaadAKVDSKSQEKL........LAPSaptltlaKFNQVTVGMTRA......   98
DSSP  EEEEEEllllllLLEEEEEEELL........LLLLlllllhhHHHHLLLLLLHH......


DSSP  lllllleeeeeellllllllllllhhHHLLL.EEEEEEEEL...................
Query aegsqhisyqfsgewrgpeglmpsddTLKNW.KVSKIIWRR...................  145
ident                                                             
Sbjct .......................qvlATVGQgSCTTWSEYYpaypstagvtlslscfdvd  135
DSSP  .......................hhhHHHLLlLEEEEEEELllllllllleeeeeeelll


DSSP  ..............................
Query ..............................  145
ident                               
Sbjct gysstgfyrgsahlwftdgvlqgkrqwdlv  165
DSSP  lllllllllleeeeeeelleeeeeeeelll


No 2: 2GU3A  MOLECULE: YPMB PROTEIN;                                              

DSSP  ......................................................lleell
Query ......................................................tkvseq    6
ident                                                             
Sbjct keegheaaaaeakketdlahvdqvetfvgkekyyvvkgtdkkgtalyvwvpadkkakils   60
DSSP  llllhhhhhhhhhhhlleeeeeeeeeeellleeeeeeeeelllleeeeeeelllllllee


DSSP  eelllllllllLHHHHHHHL.lLLLEEEEEEEEEllEEEEEEEEEE..lLEEEEEEEL.L
Query gvgeltastplQEQAIADAL.dGDYRLRSGMKTAngNVVRFFEVMK..gDNVAMVING.G   62
ident                | |                  ||                      
Sbjct keakegisedkAAKIIKDEGlvSKQKEVHLAREG..NVLLWEVTYLdkeGQYSLSYVDfT  118
DSSP  eehhhlllhhhHHHHHHHLLllLEEEEEEEEEEL..LEEEEEEEEElllLLEEEEEEElL


DSSP  LLL.EEEELLllllllllllllllhhhhllllllleeelleeeelllllleeeeeellll
Query TIS.RIDVLDsdipadtgvkigtpfsdlyskafgncqkaaveckaegsqhisyqfsgewr  121
ident |                                                           
Sbjct TGKiLKNITP..................................................  128
DSSP  LLLeEEEELL..................................................


DSSP  llllllllhhhhllleeeeeeeel
Query gpeglmpsddtlknwkvskiiwrr  145
ident                         
Sbjct ........................  128
DSSP  ........................


No 3: 2HJWA  MOLECULE: ACETYL-COA CARBOXYLASE 2;                                  

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct hrdftvaspaefvtrfggdrviekvlianngiaavkcmrsirrwayemfrnerairfvvm   60
DSSP  llllllllhhhhhhhlllllllleeeelllhhhhhhhhhhhhhhhhhhhlllllleeeee


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct vtpedlkanaeyikmadhyvpvpggpnnnnyanvelivdiakripvqavwagwghasenp  120
DSSP  elhhhhhlllhhhhhlleeeelllllhhhllllhhhhhhhhhhlllleeellllllllll


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct klpellckngvaflgppseamwalgdkiastvvaqtlqvptlpwsgsgltvewqgkrisv  180
DSSP  hhhhhhhhllleellllhhhhhllllhhhhhhhhhhllllllllllllllllllllllll


DSSP  ...........................................lleelleelllllllll
Query ...........................................tkvseqgvgeltastpl   17
ident                                                             
Sbjct pedvydkgcvkdvdegleaaerigfplmikaseggggkgirkaesaedfpilfrqvqsei  240
DSSP  lhhhhlllllllhhhhhhhhhhhllleeeeelllllllleeeelllllhhhhhhhhhhhl


DSSP  lhhhhhhhllllleEEEEEEEEL.....LEEE.EEEE.EEELLEEEEEEEL.........
Query qeqaiadaldgdyrLRSGMKTAN.....GNVV.RFFE.VMKGDNVAMVING.........   61
ident                                                             
Sbjct pgspiflmklaqhaRHLEVQILAdqygnAVSLfGRDCsIQRRHQKIVEEAPatiaplaif  300
DSSP  lllleeeeelllllEEEEEEEEElllllEEEEeEEEEeEELLLLEEEEEELlllllhhhh


DSSP  ............................................................
Query ............................................................   61
ident                                                             
Sbjct efmeqcairlaktvgyvsagtveylysqdgsfhflelnprlqvehpctemiadvnlpaaq  360
DSSP  hhhhhhhhhhhhhlllleeeeeeeeellllleeeeeeelllllllhhhhhhhlllhhhhh


DSSP  .......................................LLLLEEEELlllllllllllL
Query .......................................GTISRIDVLdsdipadtgvkI   82
ident                                             |              |
Sbjct lqiamgvplhrlkdirllygespwgvtpisfetpsnpplARGHVIAAR...........I  409
DSSP  hhhhllllhhhlhhhhhhlllllllllllllllllllllLLLEEEEEE...........E


DSSP  LLLhhhhllllllleeelLEEEELLLLLLEEEEEELlllllllllllhhhhlllEEEEEE
Query GTPfsdlyskafgncqkaAVECKAEGSQHISYQFSGewrgpeglmpsddtlknwKVSKII  142
ident                     |     |      ||                         
Sbjct TSE............sgtVQELNFRSSKNVWGYFSV..................QFGHCF  439
DSSP  ELL............lllEEEELLLLLLLEEEEEEL..................LEEEEE


DSSP  EEL....................................................
Query WRR....................................................  145
ident                                                        
Sbjct SWGenreeaisnmvvalkelsirgdfrttveylinlletesfqnndidtgwldyl  494
DSSP  EEEllhhhhhhhhhhhhhhhhhlhhhllllhhhhhhhhlhhhhllllllhhhlll


No 4: 1O0WA  MOLECULE: RIBONUCLEASE III;                                          

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct hhmneserkiveefqketginfkneellfralchssyaneqnqagrkdvesnekleflgd   60
DSSP  llllhhhhhhhhhhhhhhllllllhhhhhhhhllhhhhhhhhhlllllllllhhhhhhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct avlelfvceilykkypeaevgdlarvksaaaseevlamvsrkmnlgkflflgkgeektgg  120
DSSP  hhhhhhhhhhhhhhlllllhhhhhhhhhhhllhhhhhhhhhhllhhhhllllhhhhhllh


DSSP  ........................................lleELLEellllllllllhh
Query ........................................tkvSEQGvgeltastplqeq   20
ident                                                             
Sbjct rdrdsiladafeallaaiyldqgyekikelfeqefefyiekimKGEM...........lf  169
DSSP  hhlhhhhhhhhhhhhhhhhhhhlhhhhhhhhhhhhhhhhhhhhLLLL...........ll


DSSP  HHHHHLL........lLLEEEE.EEEEELLEEEEEEEEEELLEEEEEEELLllleeeell
Query AIADALD........gDYRLRS.GMKTANGNVVRFFEVMKGDNVAMVINGGtisridvld   71
ident     ||                       |      ||           |          
Sbjct DYKTALQeivqsehkvPPEYILvRTEKNDGDRIFVVEVRVNGKTIATGKGR.........  220
DSSP  LHHHHHHhhhhhhhllLLEEEEeEEELLLLLLEEEEEEEELLEEEEEEEEL.........


DSSP  llllllllllllllhhhhllllllleeelleeeelllllleeeeeellllllllllllhh
Query sdipadtgvkigtpfsdlyskafgncqkaaveckaegsqhisyqfsgewrgpeglmpsdd  131
ident                                                             
Sbjct ........................................................tkke  224
DSSP  ........................................................lhhh


DSSP  hhllleeeeeeeel
Query tlknwkvskiiwrr  145
ident               
Sbjct aekeaariayekll  238
DSSP  hhhhhhhhhhhhhl


No 5: 1Q5FA  MOLECULE: PILS;                                                      

DSSP  ........LLEElleELLLL...LLLL.............LLHHHHHH.HLLLLlEEEEE
Query ........TKVSeqgVGELT...ASTP.............LQEQAIAD.ALDGDyRLRSG   35
ident         |         |                          |   |  |       
Sbjct mwgkkdagTELT..nYQTLAtntIGMMkgvdgyaftsgakMTDTLIQAgAAKGM.TVSGD   57
DSSP  lllllllhHHHH..hHHHHHhhhLLLLllllllllllllhHHHHHHHLlLLLLL.LEELL


DSSP  EEeelleeEEEEEEEELL.EEEEEEE......lllllEEEELLLLllllllllllllhhh
Query MKtangnvVRFFEVMKGD.NVAMVIN......ggtisRIDVLDSDipadtgvkigtpfsd   88
ident                        |                                    
Sbjct PA......SGSATLWNSWgGQIVVAPdtaggtgfnngFTITTNKV...............   96
DSSP  LL......LLLEEEELLLlLEEEEEElllllllllleEEEEEELL...............


DSSP  hllllllleeelleeeelLLLLLEEEEEEllllllllllllhHHHLL......leEEEEE
Query lyskafgncqkaaveckaEGSQHISYQFSgewrgpeglmpsdDTLKN......wkVSKII  142
ident                    |                                        
Sbjct ....pqsacvsistgmsrSGGTSGIKINGnnhtdakvtaeiaSSECTadngrtgtNTLVF  152
DSSP  ....lhhhhhhhhhhhhlLLLLLLLEELLlllllllllhhhhHHHLLllllllllLEEEE


DSSP  EEL.
Query WRR.  145
ident     
Sbjct NYNg  156
DSSP  EEEl


No 6: 1Y7PA  MOLECULE: HYPOTHETICAL PROTEIN AF1403;                               

DSSP  lleelleelllllllllLHHHHHHHLLLLLEEEEEEEEELL.EEEEEEEEEEL.....le
Query tkvseqgvgeltastplQEQAIADALDGDYRLRSGMKTANG.NVVRFFEVMKG.....dn   54
ident                                                             
Sbjct ....lrglriiaenkigVLRDLTTIIANITFAQTFLIKHGEhEGKALIYFEIEggdfeki   56
DSSP  ....leeeeeeeellllHHHHHHHHLLLEEEEEEEELLLLLlLLEEEEEEEELlllhhhh


DSSP  eeeeeellLLLEEEELLLlllllllllllllhhhhllllllleeelleeeelllllleee
Query vamvinggTISRIDVLDSdipadtgvkigtpfsdlyskafgncqkaaveckaegsqhisy  114
ident          |  |    |                                          
Sbjct lervktfdYIIEIEEEES..............................fervfgkrviil   86
DSSP  hhhhhlllLEEEEEEELL..............................hhhhlleeeeee


DSSP  eeelllllLLLLL..LLHHHHLLLE...................................
Query qfsgewrgPEGLM..PSDDTLKNWK...................................  137
ident                  |                                          
Sbjct gggalvsqVAIGAisEADRHNLRGErisvdtmpvvgeeeiaeavkavsrlhraevlvlag  146
DSSP  elhhhhhhHHHHHhhHHHHHHHLLLleeeeeeelllhhhhhhhhhhhhhllleeeeeeel


DSSP  ..........................................................ee
Query ..........................................................vs  139
ident                                                             
Sbjct gimggkiteevkklrksgirvislsmfgsvpdvadvvisdpvmagtlavmhisekakfdl  206
DSSP  lllllhhhhhhhhhhhhlleeeeelllllhhhhlleeellhhhhhhhhhhhhlllllllh


DSSP  eeeeel
Query kiiwrr  145
ident       
Sbjct drvkgr  212
DSSP  hhllll


No 7: 1VR8A  MOLECULE: GTP BINDING REGULATOR;                                     

DSSP  lleelleellLLLL.LLLLhhHHHHHLL...LLLE.EEEEEEeelleeEEEEEEEEL...
Query tkvseqgvgeLTAS.TPLQeqAIADALD...GDYR.LRSGMKtangnvVRFFEVMKG...   52
ident                  |        |                                 
Sbjct ...kihhhhhHPPEaYSLD..TAIFVLEtrdYRLSdVKEIDS.ygdveXKGKVAVFEtey   54
DSSP  ...lllllllLLLLlLLHH..HHHHLLLlllLEEEeEEEEEE.elleeEEEEEEEEEell


DSSP  LEEEEEEELLllleeeelllllllllllllLLLHhhhllllllleeellEEEELlLLLLE
Query DNVAMVINGGtisridvldsdipadtgvkiGTPFsdlyskafgncqkaaVECKAeGSQHI  112
ident   |      |                                                  
Sbjct GPVFLYVYKG........eeakkiwkklngRVSI...............RSVLD.LPNXG   90
DSSP  EEEEEEEEEL........llhhhhhhhhhlLLLL...............EEEEE.LLLEE


DSSP  EEEEEllllllllllllhhhhllleeEEEEEEL...........................
Query SYQFSgewrgpeglmpsddtlknwkvSKIIWRR...........................  145
ident                               | |                           
Sbjct KFSTV.................sngkKIVAWWRknwlfivegkngveefvkhvyrvyeex  133
DSSP  EEEEE.................elleEEEEEEElleeeeeeelllhhhhhhhhhhhhhll


DSSP  ..
Query ..  145
ident   
Sbjct kq  135
DSSP  ll


No 8: 1BXNI  MOLECULE: PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE           

DSSP  ...lleelleelllLLLLlllhHHHHHHL.LLLLEEEEEEEEE.................
Query ...tkvseqgvgelTASTplqeQAIADAL.DGDYRLRSGMKTA.................   39
ident               |                                             
Sbjct mritqgtfsflpelTDEQ...iTKQLEYClNQGWAVGLEYTDDphprntywemfglpmfd   57
DSSP  llllllllllllllLHHH...hHHHHHHHhHHLLEEEEEEELLlllllllleelllllll


DSSP  .................llEEEEEEEEEEL..LEEEEEEELLllleeeelllllllllll
Query .................ngNVVRFFEVMKG..DNVAMVINGGtisridvldsdipadtgv   80
ident                    |                 |                      
Sbjct lrdaagilmeinnarntfpNHYIRVTAFDSthTVESVVMSFI..................   99
DSSP  lllhhhhhhhhhhhhhhllLLEEEEEEELLllLLEEEEEELL..................


DSSP  lllllhhhhllllllleeelleeeelllllleeeeeellllllLLLLLLHHHhllleeee
Query kigtpfsdlyskafgncqkaaveckaegsqhisyqfsgewrgpEGLMPSDDTlknwkvsk  140
ident                                                             
Sbjct ................................vnrpadepgfrLVRQEEPGR...tlrys  124
DSSP  ................................llhhhllllleEEEEELLLL...leeee


DSSP  eeeel
Query iiwrr  145
ident      
Sbjct iesya  129
DSSP  eelll