DaliLite: Structural Neighbours

Query: 2OX7C MOLECULE: HYPOTHETICAL PROTEIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2OX7-A 22.4  1.0  142   144  100   HYPOTHETICAL PROTEIN;                                      "         
   2:  2P84-A  9.3  4.7  104   133   36   ORF041;                                                    "         
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No 1: 2OX7A  MOLECULE: HYPOTHETICAL PROTEIN;                                      

DSSP  LLLLLEEEEELLLLEEEEEEEEEELLLLLEEEEEEEEEEELLLlLLEEEEEEEEEHHHLL
Query SLIPKFRAWDTYEKEXLENVTPLFDDSNSXIAIITDFQIKGSPgTSEIEIGSYDTTFNWD   60
ident ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct SLIPKFRAWDTYEKEXLENVTPLFDDSNSXIAIITDFQIKGSPgTSEIEIGSYDTTFNWD   60
DSSP  LLLLLEEEEELLLLEEEEEEEEEELLLLLEEEEELLEEEEEELlEEEEEELLEEEHHHLL


DSSP  LLLEEEEEEEEEELLLLLEEELLEEEEELLLLLLLLLLLLEEEEEELLEEEELLLLLLLL
Query EFPYVIXQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSXHEIAYADGRFFWEFLDLVFC  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct EFPYVIXQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSXHEIAYADGRFFWEFLDLVFC  120
DSSP  LLLEEEEEEEEEELLLLLEEELLEEEEELLLLLLLLLLLEEEEEEELLEEEELLLLLLLL


DSSP  HHHHHLLLLEEEEEELLLLLLLL.
Query QSNILYRDGYLVIGNIHENPELL.  143
ident ||||||||||||||||||||||| 
Sbjct QSNILYRDGYLVIGNIHENPELLe  144
DSSP  HHHHHLLLLEEEEEELLLLLLLLl


No 2: 2P84A  MOLECULE: ORF041;                                                    

DSSP  llLLLEEEEELLLL......EEEEeEEEEELLLLleeEEEEEEeeelllllleeeeeeee
Query slIPKFRAWDTYEK......EXLEnVTPLFDDSNsxiAIITDFqikgspgtseieigsyd   54
ident   |||||  |                     |      |  |                  
Sbjct .lIPKFREFDRERHrtdyqkGMSY.AEQQDFDMG..fTIWFDH............iedld   44
DSSP  .lLLLEEEELHHHHhlllllLEEE.LEEEEELLE..eEEELLL............lllhh


DSSP  ehhhlLLLLEEEEEEEEEELLLLLEEELLEEEEELLlllllllLLLEEEEEELLEEEELL
Query ttfnwDEFPYVIXQSTGLKDKNGVEIFEGDILVYDApkkyahrRSXHEIAYADGRFFWEF  114
ident               ||||||||  || | ||                     || |    
Sbjct liekdGTINRIVMMSTGLKDKNVKEIYESDIVRNLY.......GELYVVEWLDGSFVLTE   97
DSSP  hllllLLLLLEEEEEEEEELLLLLEEELLEEEEELL.......LLEEEEEEELLEEEEEE


DSSP  .....LLLLLLHhHHHLlllEEEEEELLLLLLLL......
Query .....LDLVFCQsNILYrdgYLVIGNIHENPELL......  143
ident       |             | | ||| ||||||      
Sbjct fynggYDHYIID.SSTE...YEVLGNIYENPELLeddnha  133
DSSP  lllllLEEELLL.HHHH...EEEEEELLLLHHHHllllll