DaliLite: Structural Neighbours

Query: 2OX7B MOLECULE: HYPOTHETICAL PROTEIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2OX7-A 22.5  1.2  144   144  100   HYPOTHETICAL PROTEIN;                                      "         
   2:  2P84-A  9.9  4.3  104   133   37   ORF041;                                                    "         
   3:  2D1X-A  2.0  2.7   41    60   10   CORTACTIN ISOFORM A;                                       "         
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No 1: 2OX7A  MOLECULE: HYPOTHETICAL PROTEIN;                                      

DSSP  LLLLLEEEEELLLLEEEEEEEEEELLLLLEEEEEEEEEEEEELLEEEEEEEEEEEHHHLL
Query SLIPKFRAWDTYEKEXLENVTPLFDDSNSXIAIITDFQIKGSPGTSEIEIGSYDTTFNWD   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct SLIPKFRAWDTYEKEXLENVTPLFDDSNSXIAIITDFQIKGSPGTSEIEIGSYDTTFNWD   60
DSSP  LLLLLEEEEELLLLEEEEEEEEEELLLLLEEEEELLEEEEEELLEEEEEELLEEEHHHLL


DSSP  LLLEEEEEEEEEELLLLLEEELLEEEEELLLLLLLLLLLLEEEEEELLEEEELLLLLLLL
Query EFPYVIXQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSXHEIAYADGRFFWEFLDLVFC  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct EFPYVIXQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSXHEIAYADGRFFWEFLDLVFC  120
DSSP  LLLEEEEEEEEEELLLLLEEELLEEEEELLLLLLLLLLLEEEEEEELLEEEELLLLLLLL


DSSP  HHHHHLLLLEEEEEELLLLHHHHL
Query QSNILYRDGYLVIGNIHENPELLE  144
ident ||||||||||||||||||||||||
Sbjct QSNILYRDGYLVIGNIHENPELLE  144
DSSP  HHHHHLLLLEEEEEELLLLLLLLL


No 2: 2P84A  MOLECULE: ORF041;                                                    

DSSP  llLLLEEEEELLLL......EEEEeEEEEELLLLleeEEEEEeeeeeelleeeeeeeeee
Query slIPKFRAWDTYEK......EXLEnVTPLFDDSNsxiAIITDfqikgspgtseieigsyd   54
ident   |||||  |                     |      |  |                  
Sbjct .lIPKFREFDRERHrtdyqkGMSY.AEQQDFDMG..fTIWFD............hiedld   44
DSSP  .lLLLEEEELHHHHhlllllLEEE.LEEEEELLE..eEEELL............llllhh


DSSP  ehhhlLLLLEEEEEEEEEELLLLLEEELLEEEEELLlllllllLLLEEEEEELLEEEELL
Query ttfnwDEFPYVIXQSTGLKDKNGVEIFEGDILVYDApkkyahrRSXHEIAYADGRFFWEF  114
ident               ||||||||  || | ||                     || |    
Sbjct liekdGTINRIVMMSTGLKDKNVKEIYESDIVRNLY.......GELYVVEWLDGSFVLTE   97
DSSP  hllllLLLLLEEEEEEEEELLLLLEEELLEEEEELL.......LLEEEEEEELLEEEEEE


DSSP  .....LLLLLLhHHHHlllLEEEEEELLLLHHHHL.....
Query .....LDLVFCqSNILyrdGYLVIGNIHENPELLE.....  144
ident       |             | | ||| |||||||     
Sbjct fynggYDHYII.DSST...EYEVLGNIYENPELLEddnha  133
DSSP  lllllLEEELL.LHHH...HEEEEEELLLLHHHHLlllll


No 3: 2D1XA  MOLECULE: CORTACTIN ISOFORM A;                                       

DSSP  llllLEEEEELLL.............LEEEEEEEEEElllllEEEEEEEeeeeeelleee
Query slipKFRAWDTYE.............KEXLENVTPLFddsnsXIAIITDfqikgspgtse   47
ident        |   |                   |                            
Sbjct .ndlGITAVALYDyqaagddeisfdpDDIITNIEMID.....DGWWRGV..........c   44
DSSP  .lllLLLEEELLLlllllllllllllLLEEEEEELLL.....LLEEEEE..........e


DSSP  eeEEEEEEHhhlllLLEEEEEeeeeellllleeelleeeeelllllllllllleeeeeel
Query ieIGSYDTTfnwdeFPYVIXQstglkdkngveifegdilvydapkkyahrrsxheiayad  107
ident                     |                                       
Sbjct kgRYGLFPA.....NYVELRQ.......................................   60
DSSP  llEEEEEEH.....HHEEELL.......................................


DSSP  leeeellllllllhhhhhlllleeeeeellllhhhhl
Query grffwefldlvfcqsnilyrdgylvignihenpelle  144
ident                                      
Sbjct .....................................   60
DSSP  .....................................