DaliLite: Structural Neighbours

Query: 2OX7A MOLECULE: HYPOTHETICAL PROTEIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2OX7-A 25.1  0.0  144   144  100   HYPOTHETICAL PROTEIN;                                      "         
   2:  2P84-A  9.8  3.6  102   133   35   ORF041;                                                    "         
   3:  2J58-A  2.4  7.3   61   356    7   OUTER MEMBRANE LIPOPROTEIN WZA;                            "         
   4:  2GZB-A  2.3  3.4   56   164   11   KUNITZ-TYPE PROTEINASE INHIBITOR BBCI;                     "         
-

No 1: 2OX7A  MOLECULE: HYPOTHETICAL PROTEIN;                                      

DSSP  LLLLLEEEEELLLLEEEEEEEEEELLLLLEEEEELLEEEEEELLEEEEEELLEEEHHHLL
Query SLIPKFRAWDTYEKEXLENVTPLFDDSNSXIAIITDFQIKGSPGTSEIEIGSYDTTFNWD   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct SLIPKFRAWDTYEKEXLENVTPLFDDSNSXIAIITDFQIKGSPGTSEIEIGSYDTTFNWD   60
DSSP  LLLLLEEEEELLLLEEEEEEEEEELLLLLEEEEELLEEEEEELLEEEEEELLEEEHHHLL


DSSP  LLLEEEEEEEEEELLLLLEEELLEEEEELLLLLLLLLLLEEEEEEELLEEEELLLLLLLL
Query EFPYVIXQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSXHEIAYADGRFFWEFLDLVFC  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct EFPYVIXQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSXHEIAYADGRFFWEFLDLVFC  120
DSSP  LLLEEEEEEEEEELLLLLEEELLEEEEELLLLLLLLLLLEEEEEEELLEEEELLLLLLLL


DSSP  HHHHHLLLLEEEEEELLLLLLLLL
Query QSNILYRDGYLVIGNIHENPELLE  144
ident ||||||||||||||||||||||||
Sbjct QSNILYRDGYLVIGNIHENPELLE  144
DSSP  HHHHHLLLLEEEEEELLLLLLLLL


No 2: 2P84A  MOLECULE: ORF041;                                                    

DSSP  llLLLEEEEELLLL......EEEEEEEeeellllleeeeellEEEEeelleeeeeelleE
Query slIPKFRAWDTYEK......EXLENVTplfddsnsxiaiitdFQIKgspgtseieigsyD   54
ident   |||||  |                                                 |
Sbjct .lIPKFREFDRERHrtdyqkGMSYAEQ..............qDFDM.gftiwfdhiedlD   44
DSSP  .lLLLEEEELHHHHhlllllLEEELEE..............eEELL.eeeeellllllhH


DSSP  EHHHlLLLLEEEEEEEEEELLLLLEEELLEEEEELLlllllllLLEEEEEEELLEEEELL
Query TTFNwDEFPYVIXQSTGLKDKNGVEIFEGDILVYDApkkyahrRSXHEIAYADGRFFWEF  114
ident               ||||||||  || | ||                     || |    
Sbjct LIEKdGTINRIVMMSTGLKDKNVKEIYESDIVRNLY.......GELYVVEWLDGSFVLTE   97
DSSP  HLLLlLLLLLEEEEEEEEELLLLLEEELLEEEEELL.......LLEEEEEEELLEEEEEE


DSSP  .....LLLLLLhHHHHlllLEEEEEELLLLLLLLL.....
Query .....LDLVFCqSNILyrdGYLVIGNIHENPELLE.....  144
ident       |             | | ||| |||||||     
Sbjct fynggYDHYII.DSST...EYEVLGNIYENPELLEddnha  133
DSSP  lllllLEEELL.LHHH...HEEEEEELLLLHHHHLlllll


No 3: 2J58A  MOLECULE: OUTER MEMBRANE LIPOPROTEIN WZA;                            

DSSP  ...llllleeeeelllleeeeeeeeeellllleeeeelleeeeeeLLEEEEEELLEeehh
Query ...slipkfrawdtyekexlenvtplfddsnsxiaiitdfqikgsPGTSEIEIGSYdttf   57
ident                                                             
Sbjct xtiipgqglnslrknvvelpdsdydldklvnvypxtpglidqlrpEPVIARSNPQL....   56
DSSP  lllllllllllllleelllllllllhhhheeeeellhhhhhhhllLLLLLLLLHHH....


DSSP  hllllleeeeeeeeeelllLLEEELLEEEEELLL........lLLLLLL..LEEEEEEel
Query nwdefpyvixqstglkdknGVEIFEGDILVYDAP........kKYAHRR..SXHEIAYad  107
ident                       |  || |                               
Sbjct ............dnllksyEYRIGVGDVLXVTVWdhpelttpaGQYRSAsdTGNWVNS..  102
DSSP  ............hhhhhllLLLLLLLLEEEEEELllhhhhlllLLLLLHhhHLEELLL..


DSSP  lEEEE.lllLLLLL.....hhHHHL.............lLLEEEEEEL............
Query gRFFW.eflDLVFC.....qsNILY.............rDGYLVIGNI............  136
ident                                                             
Sbjct .DGTIfypyIGKVQvagktvsQVRQditsrlttyiespqVDVSIAAFRsqkvyvtgevan  161
DSSP  .LLEEeellLEEEElllllhhHHHHhhhhhhllllllllEEEEEEELLlleeeeeellll


DSSP  ............................................................
Query ............................................................  136
ident                                                             
Sbjct sgkqaitnipltvxdainaagglaadadwrnvvlthngkdtkislyalxqkgdltqnhll  221
DSSP  leeeelllllllhhhhhhhlllllllllllleeeeelleeeeelhhhhhllllhhhllll


DSSP  ............................................................
Query ............................................................  136
ident                                                             
Sbjct yhgdilfipsnddlkvfvxgevgkqstlkxdrsgxtlaealgnaegisqexsdatgifvv  281
DSSP  lllleeeellhhhleeeeeellllleeeelllllllhhhhhhhlllllllleeeeeeeee


DSSP  ............................................................
Query ............................................................  136
ident                                                             
Sbjct rqlkgdrtgkiadiyqlnaqdasaxvlgtefqlqpydivyvttaplvrwnrvisqlvpti  341
DSSP  eellllllllleeeeeellllhhhhhhhlllllllleeeeeeelhhhhhhhhhlllhhhh


DSSP  .......llllllll
Query .......henpelle  144
ident                
Sbjct sgvhdxtetvryikr  356
DSSP  hhhhhhhhhhhhhll


No 4: 2GZBA  MOLECULE: KUNITZ-TYPE PROTEINASE INHIBITOR BBCI;                     

DSSP  llllleeeeelllleeeeeeeeeellllleeeeelleeeeeelleeeeeelleeehhhll
Query slipkfrawdtyekexlenvtplfddsnsxiaiitdfqikgspgtseieigsydttfnwd   60
ident                                                             
Sbjct ............................................................    0
DSSP  ............................................................


DSSP  llleeeeeeeEEELLLLLEEEL.LEEEEELL......................lLLLLLL
Query efpyvixqstGLKDKNGVEIFE.GDILVYDA......................pKKYAHR   97
ident              |  |       |                                 ||
Sbjct .......hmsVILDTKGEPVSNaADAYYLVPvshgegglalakvgneaepkavvLDPHHR   53
DSSP  .......lllLLLLLLLLLLLLlLLLEEEEElllllleeeeellllllllleeeEELLLL


DSSP  .LLEEEEEEELL........EEEELL..............................lllL
Query .RSXHEIAYADG........RFFWEF..............................ldlV  118
ident                          |                                  
Sbjct pGLTVRFETPLAiaiitesfFLNIKFvpsssdsevwdvskqypiglavkvtdtksfvgpF  113
DSSP  lLLEEEEELLLLllllllllLLEEEEellllllleeeeeeellleeeeeeellllllllE


DSSP  LLHH...................................hhhlLLLEEEEEellllllll
Query FCQS...................................nilyRDGYLVIGnihenpell  143
ident                                                             
Sbjct RVEKegegykivyypdrgqtgldiglvhrndkyylaategepfVFKIRKAT.........  164
DSSP  EEEEelleeeeeelllllllleeeeeeeelleeeeeeelllllLEEEEELL.........


DSSP  l
Query e  144
ident  
Sbjct .  164
DSSP  .