DaliLite: Structural Neighbours

Query: 1YMYB MOLECULE: N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2P50-A 55.7  0.6  331   382  100   N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE;               "         
-

No 1: 2P50A  MOLECULE: N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE;               

DSSP  LEEEEEEEEELLLLEELLEEEEEELLEEEEEEELLLLLLLLEEEEEEEEEEEELEEEEEE
Query MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQL   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQL   60
DSSP  LEEEELLLEELLLLEELLEEEEEELLEEEEEEEHHHLLLLLLEEELLLLEEEELEEEEEE


DSSP  LLLLLLLL.....LLLHHHHHHHHHHHHLLLEEEEEEEEELLLHHHHHHHHHHHHHHHHH
Query NGCGGVQF.....AVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAK  115
ident ||||||||     |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct NGCGGVQFndtaeAVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAK  120
DSSP  LEELLEELlllllLLLHHHHHHHHHHHHLLLEEEEEEEEELLLHHHHHHHHHHHHHHHLL


DSSP  LLLLLLLEEEELLLLLL...............LHHHHHHHHLLLLEEEEEELHHHLLHHH
Query HPNQALGLHLEGPWLNL...............AALVDFLCENADVITKVTLAPEMVPAEV  160
ident |||||||||||||||||               ||||||||||||||||||||||||||||
Sbjct HPNQALGLHLEGPWLNLvkkgthnpnfvrkpdAALVDFLCENADVITKVTLAPEMVPAEV  180
DSSP  LLLLLLLEEEELLLLLHhhlllllllllllllHHHHHHHHHLHHHEEEEEELHHHLLHHH


DSSP  HHHHHHLLLEEEELLLLLLHHHHHHHHHLLLLEELLLLLLLLLLLLLLLHHHHHHHHLLL
Query ISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAILDEAD  220
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct ISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAILDEAD  240
DSSP  HHHHHHLLLEEEELLLLLLHHHHHHHHHLLLLEELLLLLLLLLLLLLLLHHHHHHHHLLL


DSSP  LEEEEELLLLLLLHHHHHHHHHHHHHHEEEELLLLL........................
Query IYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATA........................  256
ident ||||||||||||||||||||||||||||||||||||                        
Sbjct IYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATApaganieqfifagktiyyrnglcv  300
DSSP  LEEEEELLLLLLLHHHHHHHHHHHHHHEEEELLLLLllllllleeeelleeeeeelleee


DSSP  .......LLLLLHHHHHHHHHHHLLLLHHHHHHHLLHHHHHHLLLHHHHLLLLLLLLLLE
Query .......GSSLTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANL  309
ident        |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct dengtlsGSSLTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANL  360
DSSP  llllleeELLLLHHHHHHHHHHHLLLLHHHHHHHLLHHHHHHLLLLLLLLLLLLLLLLLE


DSSP  EEELLLLLEEEEEELLEEEEEL
Query TAFTPDFKITKTIVNGNEVVTQ  331
ident ||||||||||||||||||||||
Sbjct TAFTPDFKITKTIVNGNEVVTQ  382
DSSP  EEELLLLLEEEEEELLEEEEEL