DaliLite: Structural Neighbours

Query: 1YDFA MOLECULE: HYDROLASE, HALOACID DEHALOGENASE-LIKE FAMILY;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1YV9-A 41.6  0.7  255   257   64   HYDROLASE, HALOACID DEHALOGENASE FAMILY;                   "         
-

No 1: 1YV9A  MOLECULE: HYDROLASE, HALOACID DEHALOGENASE FAMILY;                   

DSSP  .LLLLEEEELLLLLLEELLEELHHHHHHHHHHHHLLLLEEEEELLLLLLHHHHHHHHHHH
Query .SLYKGYLIDLDGTIYKGKDRIPAGETFVHELQKRDIPYLFVTNNTTRTPESVKEMLAQN   59
ident    | ||||||||||| ||  ||||  ||  ||  | | ||||||||  || |   ||  
Sbjct sLDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANE   60
DSSP  lLLLLEEEELLLLLLEELLEELHHHHHHHHHHHHLLLLEEEEELLLLLLHHHHHHHHHHH


DSSP  LLLLLLHHHEEEHHHHHHHHHHHHLLLLEEEEELLHHHHHHHHHLLLEELLLLLLEEEEL
Query FNIDTPLSTVYTATLATIDYMNDLGLEKTVYVVGEAGLKEAIKAAGYVEDKEKPAYVVVG  119
ident | |  | | ||||||||||||      | | | |||||   |  ||   |   | |||||
Sbjct FDIHVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVG  120
DSSP  LLLLLLHHHEEEHHHHHHHHHHHHLLLLEEEEELLHHHHHHHHHLLLEELLLLLLEEEEL


DSSP  LLLLLLHHHHHHHHHHHHLLLEEEELLLLLEEEELLEEEELHHHHHHHHHHHHLLLLEEL
Query LDWQVDYEKFATATLAIQKGAHFIGTNPDLNIPTERGLLPGAGSLITLLEVATRVKPVYI  179
ident ||    |||   ||||||||| ||||||| ||||||||||||||  |  | ||  |||||
Sbjct LDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYI  180
DSSP  LLLLLLHHHHHHHHHHHHLLLEEEELLLLLEEEELLEEEELHHHHHHHHHHHHLLLLEEL


DSSP  LLLLHHHHHHHHHHHLLLHHHEEEEELLLLLHHHHHHLLLLLEEEELLLLLLHHHLLLLL
Query GKPNAIIMDKAVEHLGLEREELIMVGDNYLTDIRAGIDNGIPTLLVTTGFTKAEEVAGLP  239
ident ||| ||||  |  ||| | |  ||||||| |||  || |||  |||| |||    |  ||
Sbjct GKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLP  240
DSSP  LLLLHHHHHHHHHHHLLLHHHEEEEELLLLLHHHHHHHHLLEEEEELLLLLLLLLLLLLL


DSSP  LLLLEEELLHHHLLLL.
Query IAPTHVVSSLAEWDFD.  255
ident   || || || || |  
Sbjct TPPTYVVDSLDEWTFEg  257
DSSP  LLLLEEELLHHHLLLLl