DaliLite: Structural Neighbours

Query: 1XXLA MOLECULE: YCGJ PROTEIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2GLU-A 39.1  0.4  234   234  100   YCGJ;                                                      "         
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No 1: 2GLUA  MOLECULE: YCGJ;                                                      

DSSP  LHHHHHHHHHHHLLLLLLEEEEELLLLLHHHHHHHHHLLEEEEEELLHHHHHHHHHHHHH
Query HHHSLGLXIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEXVEVASSFAQE   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct HHHSLGLXIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEXVEVASSFAQE   60
DSSP  LHHHHHHHHHHHLLLLLLEEEEELLLLLHHHHHHHHHLLEEEEEELLHHHHHHHHHHHHH


DSSP  HLLLLEEEEELLLLLLLLLLLLEEEEEEELLHHHLLLHHHHHHHHHHHEEEEEEEEEEEE
Query KGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct KGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  120
DSSP  LLLLLEEEEELLHHHLLLLLLLLLEEEEELLHHHLLLHHHHHHHHHHHLLLLLEEEEEEE


DSSP  LLLLLHHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHLLEEEEEEEEEEEEEEHHHHHH
Query YAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAXFSANQLAYQDIQKWNLPIQYDSWIK  180
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct YAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAXFSANQLAYQDIQKWNLPIQYDSWIK  180
DSSP  LLLLLHHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHLLEEEEEEEEEEEEEEHHHHHH


DSSP  HHLLLHHHHHHHHHHHHLLLHHHHHHLLLEELLLLLEEEEEEEEEEEEEEELLL
Query RGGTPADREKQIITHLNHASDEARDTFCITLNQNGQPISFCLKAILIQGIKREG  234
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct RGGTPADREKQIITHLNHASDEARDTFCITLNQNGQPISFCLKAILIQGIKREG  234
DSSP  HHLLLHHHHHHHHHHHHLLLHHHHHHLLLEELLLLLEEEEEEEEEEEEEEELLL