DaliLite: Structural Neighbours

Query: 1WVIB MOLECULE: PUTATIVE PHOSPHATASES INVOLVED IN N-ACETYL-

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1YV9-A 40.7  0.9  253   257   62   HYDROLASE, HALOACID DEHALOGENASE FAMILY;                   "         
-

No 1: 1YV9A  MOLECULE: HYDROLASE, HALOACID DEHALOGENASE FAMILY;                   

DSSP  ..LLLEEEEELLLLLEELLEELHHHHHHHHHHHHHLLLEEEEELLLLLLHHHHHHHHHHH
Query ..TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATS   58
ident    | ||||||||||| ||  ||||  || ||||  ||   ||||||  || |   ||  
Sbjct slDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANE   60
DSSP  llLLLEEEELLLLLLEELLEELHHHHHHHHHHHHLLLLEEEEELLLLLLHHHHHHHHHHH


DSSP  HLLLLLHHHEEEHHHHHHHHHHHHLLLLEEEEELLHHHHHHHHHLLLEELLLLLLEEEEL
Query FNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVG  118
ident | |  |    |||||||||||    |||   |||| ||     |||   |  || |||||
Sbjct FDIHVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVG  120
DSSP  LLLLLLHHHEEEHHHHHHHHHHHHLLLLEEEEELLHHHHHHHHHLLLEELLLLLLEEEEL


DSSP  LLLLLLHHHHHHHHHHHHLLLEEEELLLLLEEEELLEEEELHHHHHHHHHHHHLLLLEEL
Query LDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIII  178
ident ||| | |||  |||||||||| ||||||| |||||||||||||      | ||  ||  |
Sbjct LDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYI  180
DSSP  LLLLLLHHHHHHHHHHHHLLLEEEELLLLLEEEELLEEEELHHHHHHHHHHHHLLLLEEL


DSSP  LLLLHHHHHHHHHHHLLLHHHEEEEELLLLLLHHHHHHLLLEEEEELLLLLLLLLHHHLL
Query GKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALP  238
ident ||| | ||  |   |||     ||||||| |||  || | |  |||| |||    || ||
Sbjct GKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLP  240
DSSP  LLLLHHHHHHHHHHHLLLHHHEEEEELLLLLHHHHHHHHLLEEEEELLLLLLLLLLLLLL


DSSP  LLLLEEELLHHHLLL..
Query IQPDFVLSSLAEWDF..  253
ident   |  |  || || |  
Sbjct TPPTYVVDSLDEWTFeg  257
DSSP  LLLLEEELLHHHLLLll