DaliLite: Structural Neighbours

Query: 1UB4C MOLECULE: MAZF PROTEIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1UB4-C 10.0  0.0   75    75  100   MAZF PROTEIN;                                              "         
   2:  1YFB-A  4.2  2.2   48    52   23   TRANSITION STATE REGULATORY PROTEIN ABRB;                  "         
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No 1: 1UB4C  MOLECULE: MAZF PROTEIN;                                              

DSSP  LLLLEEEELLEEEELLLHHHHHHLLLLLLLLEELLLLLLLLLLEELLLLLLLLHHHHHHL
Query IHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVND   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct IHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVND   60
DSSP  LLLLEEEELLEEEELLLHHHHHHLLLLLLLLEELLLLLLLLLLEELLLLLLLLHHHHHHL


DSSP  LLLLLLLLLLLLLLL
Query ITPENLHENIDWGEP   75
ident |||||||||||||||
Sbjct ITPENLHENIDWGEP   75
DSSP  LLLLLLLLLLLLLLL


No 2: 1YFBA  MOLECULE: TRANSITION STATE REGULATORY PROTEIN ABRB;                  

DSSP  ....LLLLEEEElLEEEELLLHHHHHHLLLLLLLLEELLLLLLLLLLEELLLLllllhhh
Query ....IHSSVKRWgNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEpvftlae   56
ident          |       | ||  |   |     |   |   | | |              
Sbjct fmksTGIVRKVD.ELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPN.......   52
DSSP  llllLLEEEELL.LLLEEELLHHHHHHLLLLLLLEEEEEEELLEEEEEELLLL.......


DSSP  hhhllllllllllllllll
Query lvnditpenlhenidwgep   75
ident                    
Sbjct ...................   52
DSSP  ...................