DaliLite: Structural Neighbours

Query: 1UB4A MOLECULE: MAZF PROTEIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1UB4-A 24.4  0.0  103   103  100   MAZF PROTEIN;                                              "         
   2:  1NE8-A 13.2  2.3   99   116   24   CONSERVED HYPOTHETICAL PROTEIN YDCE;                       "         
   3:  2C06-A 12.2  2.4   97   110   27   5'-R(*AP*UP*AP*CP*AP)-3';                                  "         
   4:  1Y96-A  5.5  3.4   70    86   10   GEM-ASSOCIATED PROTEIN 6;                                  "         
   5:  2E5Q-A  4.3  2.9   55    63   11   PHD FINGER PROTEIN 19;                                     "         
   6:  2NS2-A  4.2  2.4   66   201   11   SPINDLIN-1;                                                "         
   7:  1H3Z-A  4.2  2.9   61   108   10   HYPOTHETICAL 62.8 KDA PROTEIN C215.07C;                    "         
   8:  2GFU-A  3.8  3.1   70   134   13   DNA MISMATCH REPAIR PROTEIN MSH6;                          "         
   9:  2F5K-A  3.8  2.2   47    83   11   MORF-RELATED GENE 15 ISOFORM 1;                            "         
  10:  2B8A-A  3.8  3.4   67   110   10   HEPATOMA-DERIVED GROWTH FACTOR;                            "         
  11:  2D9T-A  3.6  3.0   56    78   13   TUDOR DOMAIN-CONTAINING PROTEIN 3;                         "         
  12:  1I8F-A  3.6  3.6   58    71    7   PUTATIVE SNRNP SM-LIKE PROTEIN;                            "         
  13:  2BKI-A  3.3  2.7   48   824    8   UNCONVENTIONAL MYOSIN;                                     "         
  14:  2DIG-A  3.2  3.9   53    68    6   LAMIN-B RECEPTOR;                                          "         
  15:  2E6Z-A  3.0  2.3   46    59   15   TRANSCRIPTION ELONGATION FACTOR SPT5;                      "         
  16:  2DYB-A  2.7  3.8   54   298    7   NEUTROPHIL CYTOSOL FACTOR 4;                               "         
  17:  1IXD-A  2.6  2.7   54   104    7   CYLINDROMATOSIS TUMOUR-SUPPRESSOR CYLD;                    "         
  18:  2GCX-A  2.5  2.4   50    75    2   FERROUS IRON TRANSPORT PROTEIN A;                          "         
  19:  2DK3-A  2.5  3.0   55    86    9   E3 UBIQUITIN-PROTEIN LIGASE HECTD1;                        "         
  20:  2HEQ-A  2.4  2.3   46    84    9   YORP PROTEIN;                                              "         
  21:  1ZQ1-A  2.4  2.7   55   437    5   GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT D;             "         
  22:  1Y71-A  2.4  2.1   47   109   13   KINASE-ASSOCIATED PROTEIN B;                               "         
  23:  1PNJ-A  2.3  3.2   50    86   12   PHOSPHATIDYLINOSITOL 3-KINASE P85-ALPHA SUBUNIT            "         
  24:  1KHC-A  2.3  2.6   50   135   24   DNA CYTOSINE-5 METHYLTRANSFERASE 3B2;                      "         
  25:  1UMU-A  2.0  3.0   44   105    9   UMUD';                                                     "         
-

No 1: 1UB4A  MOLECULE: MAZF PROTEIN;                                              

DSSP  LLLLLLLLLEEEEEELLLLEEEEEELLLHHHHHHHLLEEEEEEELLLLLLLLEEEELLLL
Query VSRYVPDMGDLIWVDFDPGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQE   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct VSRYVPDMGDLIWVDFDPGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQE   60
DSSP  LLLLLLLLLEEEEEELLLLEEEEEELLLHHHHHHHLLEEEEEEELLLLLLLLEEEELLLL


DSSP  LLEEEELLLLEEELHHHHLLEEEEELLHHHHHHHHHHHHHHHL
Query RDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG  103
ident |||||||||||||||||||||||||||||||||||||||||||
Sbjct RDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG  103
DSSP  LLEEEELLLLEEELHHHHLLEEEEELLHHHHHHHHHHHHHHHL


No 2: 1NE8A  MOLECULE: CONSERVED HYPOTHETICAL PROTEIN YDCE;                       

DSSP  lllLLLLLLEEEEEELLL.......LEEEEEELLLHHHHHHHLLEEEEEEELLL.LLLL.
Query vsrYVPDMGDLIWVDFDP.......GHRPAVVLSPFMYNNKTGMCLCVPCTTQS.KGYP.   51
ident         ||    |  |       | ||  |      |           | |  |    
Sbjct ...LIVKRGDVYFADLSPvvgseqgGVRPVLVIQNDIGNRFSPTAIVAAITAQIqKAKLp   57
DSSP  ...LLLLLLEEEEEELLLlllllllLEEEEEELLLHHHHHHLLEEEEEEEELLLlLLLLl


DSSP  LEEEEL....LLLLLEEEELLLLEEELHhHHLLEEEEELLHHHHHHHHHHHHHHHL....
Query FEVVLS....GQERDGVALADQVKSIAWrARGATKKGTVAPEELQLIKAKINVLIG....  103
ident   |       | ||| | |  |   |    |   |      |                  
Sbjct THVEIDakryGFERDSVILLEQIRTIDK.QRLTDKITHLDDEMMDKVDEALQISLAlidf  116
DSSP  LEEEELhhhhLLLLLEEEEEEEEEEEEH.HHEEEEEEELLHHHHHHHHHHHHHHLLllll


No 3: 2C06A  MOLECULE: 5'-R(*AP*UP*AP*CP*AP)-3';                                  

DSSP  lllllLLLLEEEEEELLL.......LEEEEEELLLHHHHHHHLLEEEEEEElLLLL....
Query vsryvPDMGDLIWVDFDP.......GHRPAVVLSPFMYNNKTGMCLCVPCTtQSKG....   49
ident         |    |  ||       | ||     |   |  |     || |         
Sbjct .....MERGEIWLVSLDPtagheqqGTRPVLIVTPAAFNRVTRLPVVVPVT.SGGNfart   54
DSSP  .....LLLLEEEEELLLLlllllllLLEEEEELLLHHHHHHHLLLLEELEE.LLLLllll


DSSP  LLLEEEEL..LLLLLEEEELLLLEEELHHHHLLEEEEELLHHHHHHHHHHHHHHHL
Query YPFEVVLS..GQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG  103
ident   | | |   |    ||   ||   |   |||      |                 
Sbjct AGFAVSLDgvGIRTTGVVRCDQPRTIDMKARGGKRLERVPETIMNEVLGRLSTILT  110
DSSP  LLLLLLLLllLLLLLLEELLLLLLLLLLLLLLLEEEEELLHHHHHHHLLLLHHHLL


No 4: 1Y96A  MOLECULE: GEM-ASSOCIATED PROTEIN 6;                                  

DSSP  LLLL........llLLLEEEEEEL.LLLEEEEEELLlhhhHHHHLLEEEEEEELLLllll
Query VSRY........vpDMGDLIWVDF.DPGHRPAVVLSpfmyNNKTGMCLCVPCTTQSkgyp   51
ident  |                   |           ||              |          
Sbjct MSEWmkkgplewqdYIYKEVRVTAsEKNEYKGWVLT...tDPVSANIVLVNFLEDG....   53
DSSP  LLHHhhllhhhhhhLLLLEEEEEElLLEEEEEEEEE...eLLLLLLEEEEEELLLL....


DSSP  leeeelllllleeeelLLLEEEL.hhHHLLEEEEELLHHHHHHHHHHHhhhhl
Query fevvlsgqerdgvalaDQVKSIA.wrARGATKKGTVAPEELQLIKAKInvlig  103
ident                   |  |                               
Sbjct ...............sMSVTGIMghaVQTVETMNEGDHRVREKLMHLF.....   86
DSSP  ...............lEEEEEELhhhEEEEEEEELLLHHHHHHHHLLL.....


No 5: 2E5QA  MOLECULE: PHD FINGER PROTEIN 19;                                     

DSSP  ...LLLLlLLLLEEEEEELLL.LEEEEEELLLhhhHHHHLLEEEEEEElllllllleeee
Query ...VSRYvPDMGDLIWVDFDP.GHRPAVVLSPfmyNNKTGMCLCVPCTtqskgypfevvl   56
ident     |      |                             ||                 
Sbjct gssGSSG.LTEGQYVLCRWTDgLYYLGKIKRV...SSSKQSCLVTFED............   44
DSSP  lllLLLL.LLLLLEEEEELLLlLEEEEEELLL...LLLLLEEEEEELL............


DSSP  lllllleeeelLLLEEELHHhhLLEEEEellhhhhhhhhhhhhhhhl
Query sgqerdgvalaDQVKSIAWRarGATKKGtvapeelqlikakinvlig  103
ident                   |        |                   
Sbjct ...........NSKYWVLWK..DIQHAG...............vpge   63
DSSP  ...........LLEEEEEHH..HEELLL...............llll


No 6: 2NS2A  MOLECULE: SPINDLIN-1;                                                

DSSP  llLLLLLLlEEEEEELL.....LLEEEEEELLLhhhhhHHLLEEEEEEElllllllleee
Query vsRYVPDMgDLIWVDFD.....PGHRPAVVLSPfmynnKTGMCLCVPCTtqskgypfevv   55
ident   |        |                 ||            |                
Sbjct ..RRNIVG.CRIQHGWKegngpVTQWKGTVLDQ..vpvNPSLYLIKYDG...........   44
DSSP  ..LLLLLL.LEEEEEELlllllLEEEEEEEEEE..lllLLLLEEEEELL...........


DSSP  elllllleeeelLLLEEELHHH....HLLEEEEELLHH......................
Query lsgqerdgvalaDQVKSIAWRA....RGATKKGTVAPE......................   89
ident             | |                                             
Sbjct ...........fDCVYGLELNKdervSALEVLPDRVATsrisdahladtmigkavehmfe   93
DSSP  ...........lLLLEEELLLLllleEEEEEELLLLLLlllllhhhhhhhllleeeeeee


DSSP  ..................hHHHHhhHHHH...............................
Query ..................eLQLIkaKINV...............................  100
ident                                                             
Sbjct tedgskdewrgmvlarapvMNTW..FYITyekdpvlymyqllddykegdlrimpdpgevv  151
DSSP  llllleeeeeeeeeeelllLLLL..EEEEelleeeeeeelhhhhhhllleeeelllllll


DSSP  ...............................................hhl
Query ...............................................lig  103
ident                                                   
Sbjct dslvgkqveyakedgskrtgmvihqveakpsvyfikfdddfhiyvydlvk  201
DSSP  lllllleeeeellllleeeeeeeeelllllleeeeeellllleeeeelll


No 7: 1H3ZA  MOLECULE: HYPOTHETICAL 62.8 KDA PROTEIN C215.07C;                    

DSSP  lLLLLLLLLEEEEEELLL.LEEEEEELL.........lhhhhhHHLLEEEEEEellllll
Query vSRYVPDMGDLIWVDFDP.GHRPAVVLS.........pfmynnKTGMCLCVPCttqskgy   50
ident   |     |             |  |                                  
Sbjct sERVNYKPGMRVLTKMSGfPWWPSMVVTeskmtsvarkskpkrAGTFYPVIFF.......   53
DSSP  lLLLLLLLLLEEEEEELLeEEEEEEELLhhhllhhhhhlllllLLLEEEEEEL.......


DSSP  lleeeellllllEEEElllLEEELHHhhLLEEEE........................el
Query pfevvlsgqerdGVALadqVKSIAWRarGATKKG........................tv   86
ident                               |                             
Sbjct ............PNKE...YLWTGSD..SLTPLTseaisqflekpkpktaslikaykmaq   96
DSSP  ............LLLL...LEEEEHH..HEEELLhhhhhhhhhllllllhhhhhhhhhhh


DSSP  lhhhHHHHhhHHHHhhl
Query apeeLQLIkaKINVlig  103
ident     |            
Sbjct stpdLDSL..SVPS...  108
DSSP  hlllHHHL..LLLL...


No 8: 2GFUA  MOLECULE: DNA MISMATCH REPAIR PROTEIN MSH6;                          

DSSP  .................lLLLLLLLLEEEEEELLL.LEEEEEELL...lhHHHHH...hL
Query .................vSRYVPDMGDLIWVDFDP.GHRPAVVLS...pfMYNNK...tG   36
ident                          ||| |         |  |                 
Sbjct kaknlngglrrsvapaapTSSDFSPGDLVWAKMEGyPWWPSLVYNhpfdgTFIREkgksV   60
DSSP  llllllllllllllllllLLLLLLLLLEEEELLLLlLLEEEELLLlllllLLEEEllllE


DSSP  LEEEEEEELllllllleeeelllllleeeellLLEEELHHhhLLEEEE............
Query MCLCVPCTTqskgypfevvlsgqerdgvaladQVKSIAWRarGATKKG............   84
ident                                        |                    
Sbjct RVHVQFFDD.....................spTRGWVSKR..LLKPYTgskskeaqkggh   97
DSSP  EEEEEELLL.....................llEEEEELHH..HEEELLllllllllllll


DSSP  ....................elLHHHHHHHHHHhhHHHL
Query ....................tvAPEELQLIKAKinVLIG  103
ident                           | |          
Sbjct fysakpeilramqradealnkdKIKRLELAVSD..EPSE  134
DSSP  lllllhhhhhhhhhhhhhhlllHHHHHLLLLLL..LLLL


No 9: 2F5KA  MOLECULE: MORF-RELATED GENE 15 ISOFORM 1;                            

DSSP  llllLLLLLEEEEEELLLLEEEEEELLlhhhhhHHLLEEEEEEElllllllleeeellll
Query vsryVPDMGDLIWVDFDPGHRPAVVLSpfmynnKTGMCLCVPCTtqskgypfevvlsgqe   60
ident         |        |    |          |                          
Sbjct dpkpKFQEGERVLCFHGPLLYEAKCVK.vaikdKQVKYFIHYSG................   43
DSSP  llllLLLLLLEEEEELLLLEEEEEEEE.eeeelLEEEEEEEELL................


DSSP  lleeeellLLEEELHHhhlLEEEE...ellhhhhhhhhhhhhhhhl
Query rdgvaladQVKSIAWRargATKKG...tvapeelqlikakinvlig  103
ident                      |                        
Sbjct ....wnknWDEWVPES..rVLKYVdtnlqkqrelqkanqeqyaegk   83
DSSP  ....llhhHLEEEEHH..hEEELLhhhhhhhhhhhhhhhhhhhhll


No 10: 2B8AA  MOLECULE: HEPATOMA-DERIVED GROWTH FACTOR;                            

DSSP  ....LLLLLLLLLEEEEEELLL.LEEEEEELLLHH..hhhHHLLEEEEEEelllllllle
Query ....VSRYVPDMGDLIWVDFDP.GHRPAVVLSPFM..ynnKTGMCLCVPCttqskgypfe   53
ident             |||         | ||                                
Sbjct msrsNRQKEYKCGDLVFAKMKGyPHWPARIDEMPEaavksTANKYQVFFF..........   50
DSSP  llllLLLLLLLLLLEEEEEELLeEEEEEEEEELLLlllllLLLLEEEEEL..........


DSSP  eeellllllEEEElllLEEELHHhhLLEEEE....................ellhHHHHH
Query vvlsgqerdGVALadqVKSIAWRarGATKKG....................tvapEELQL   93
ident          |                                                  
Sbjct .........GTHE...TAFLGPK..DLFPYEeskekfgkpnkrkgfseglweienNPTVK   96
DSSP  .........LLLE...EEEELHH..HEEEHHhhhhhhllllllllhhhhhhhhhhLLLLL


DSSP  HhhhHHHH.......hl
Query IkakINVL.......ig  103
ident                  
Sbjct A...SGYQssqkkscae  110
DSSP  L...LLLLlllllllll


No 11: 2D9TA  MOLECULE: TUDOR DOMAIN-CONTAINING PROTEIN 3;                         

DSSP  ....LLLLLLLLLEEEEEE..lLLLEEEEEELLLhhhHHHHLLEEEEEEellllllllee
Query ....VSRYVPDMGDLIWVD..fDPGHRPAVVLSPfmyNNKTGMCLCVPCttqskgypfev   54
ident      |  |   ||        |     | |                             
Sbjct gssgSSGKVWKPGDECFALyweDNKFYRAEVEAL...HSSGMTAVVKFT...........   46
DSSP  llllLLLLLLLLLLEEEEElllLLLEEEEEEEEE...LLLLLEEEEEEL...........


DSSP  eelllllleEEELllLEEELHHhhLLEEEEellhhhhhhhhhhhhhhhl
Query vlsgqerdgVALAdqVKSIAWRarGATKKGtvapeelqlikakinvlig  103
ident                                                  
Sbjct .........DYGN..YEEVLLS..NIKPVQ....teawvrdpnsgpssg   78
DSSP  .........LLLE..EEEEEHH..HEEELL....lllllllllllllll


No 12: 1I8FA  MOLECULE: PUTATIVE SNRNP SM-LIKE PROTEIN;                            

DSSP  LLLL...llLLLEEEEEELLLL.EEEEEELLlhhhHHHHLLEEE.EEEElllllllleee
Query VSRY...vpDMGDLIWVDFDPG.HRPAVVLSpfmyNNKTGMCLC.VPCTtqskgypfevv   55
ident            |    |             |           |                 
Sbjct ATLGatlqdSIGKQVLVKLRDShEIRGILRS....FDQHVNLLLeDAEE...........   45
DSSP  LLHHhhhhlLLLLEEEEEEHHHeEEEEEEEE....ELLLLLEEEeEEEE...........


DSSP  ellllLLEEEEllLLEEEL.hhHHLLEEEEellhhhhhhhhhhhhhhhl
Query lsgqeRDGVALadQVKSIA.wrARGATKKGtvapeelqlikakinvlig  103
ident                                                  
Sbjct ..iidGNVYKR..GTMVVRgenVLFISPVP...................   71
DSSP  ..eelLEEEEE..EEEEELhhhEEEEEELL...................


No 13: 2BKIA  MOLECULE: UNCONVENTIONAL MYOSIN;                                     

DSSP  llllllLLLEEEEEELLL.LEEEEEELLlhhhhhhHLLEEEEEEelllllllleeeelll
Query vsryvpDMGDLIWVDFDP.GHRPAVVLSpfmynnkTGMCLCVPCttqskgypfevvlsgq   59
ident         |   |      |                      |                 
Sbjct ......EDGKPVWAPHPTdGFQVGNIVD.....igPDSLTIEPL................   33
DSSP  ......LLLLLEEEEELLlEEEEEEEEE.....llLLEEEEEEL................


DSSP  llleEEELlLLEEELHHhhLLEEEE...................................
Query erdgVALAdQVKSIAWRarGATKKG...................................   84
ident                                                             
Sbjct ....NQKG.KTFLALIN..QVFPAEedskkdvedncslmylneatllhnikvryskdriy   86
DSSP  ....LLLL.LLEEEEHH..HLEELLlllllllllhhhlllllhhhhhhhhhhhhllllle


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct tyvaniliavnpyfdipkiyssetiksyqgkslgtmpphvfaiadkafrdmkvlklsqsi  146
DSSP  eeelleeeeelllllllllllhhhhhhhlllllllllllhhhhhhhhhhhhhhlllleee


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct ivsgesgagktentkfvlryltesygtgqdiddriveanplleafgnaktvrnnnssrfg  206
DSSP  eeellllllhhhhhhhhhhhhhhhhlllllhhhhhhhlhhhhhhhheellllllleelle


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct kfveihfnekssvvggfvshylleksricvqgkeernyhifyrlcagasedirerlhlss  266
DSSP  eeeeeeellllleeeeeeeeellllhhhllllllllllhhhhhhhhhllhhhhhhlllll


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct pdnfrylnrgctryfanketdkqilqnrkspeylkagslkdpllddhgdfirmctamkki  326
DSSP  hhhlhhhhlllllllllhhhhhhllhhhllhhhhhllllllllllhhhhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct glddeekldlfrvvagvlhlgnidfeeagstsggcnlknkstqaleycaellgldqddlr  386
DSSP  lllhhhhhhhhhhhhhhhhhhhlleeellllllleeellllhhhhhhhhhhllllhhhhh


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct vslttrvmlttaggakgtvikvplkveqannardalaktvyshlfdhvvnrvnqcfpfet  446
DSSP  hhlleeeeellllllllleeeeellhhhhhhhhhhhhhhhhhhhhhhhhhhhhlllllll


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct ssyfigvldiagfeyfehnsfeqfcinycneklqqffnerilkeeqelyqkeglgvnevh  506
DSSP  lleeeeeeelllllllllllhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhlllllllll


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct yvdnqdcidliearlvgildildeenrlpqpsdqhftsavhqkhkdhfrlsiprksklai  566
DSSP  llllhhhhhhhhlllllhhhhhhhhlllllllhhhhhhhhhhhlllllleelhhhlllll


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct hrnirddegfiirhfagavcyettqfveknndalhmsleslicesrdkfirelfesstnn  626
DSSP  lllllllleeeeelllleeeeelllhhhhllllllhhhhhhhhllllhhhhhhllhhhhh


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct nkdtkqkagklsfisvgnkfktqlnllldklrstgasfircikpnlkmtshhfegaqils  686
DSSP  hllllhhhhhlllllhhhhhhhhhhhhhhhhhlleeeeeeeellllllllllllhhhhhh


DSSP  ............................................................
Query ............................................................   84
ident                                                             
Sbjct qlqcsgmvsvldlmqggfpsrasfhelynmykkympdklarldprlfckalfkalglnei  746
DSSP  hhhhllhhhhhhhhhlllleeeehhhhhhhhhhhllhhhhhllhhhhhhhhhhhhlllll


DSSP  ...........................................................e
Query ...........................................................t   85
ident                                                             
Sbjct dykfgltkvffrpgkfaefdqimksdpdhlaelvkrvnhwlicsrwkkvqwcslsviklk  806
DSSP  leeellleeeellllhhhhhhhhhhlhhhhhhhhhllhhhhhhhhhhhhhhhhhhhhhhh


DSSP  llhhhhhhhhhhhhhhhl
Query vapeelqlikakinvlig  103
ident                   
Sbjct nkikyraeacikmqktir  824
DSSP  hhhhhhhhhlllllllll


No 14: 2DIGA  MOLECULE: LAMIN-B RECEPTOR;                                          

DSSP  .......LLLLLLLLLEEEEEE..lLLLEEEEEELLlhhhHHHHLLEEEEEeelllllll
Query .......VSRYVPDMGDLIWVD..fDPGHRPAVVLSpfmyNNKTGMCLCVPcttqskgyp   51
ident                |                  ||                        
Sbjct gssgssgMPSRKFADGEVVRGRwpgSSLYYEVEILS...hDSTSQLYTVKY.........   48
DSSP  lllllllLLLLLLLLLLEEEEElllLLLEEEEEEEE...eELLLLEEEEEL.........


DSSP  leeeelllllleeeELLLLEEELHhhHLLEEEeellhhhhhhhhhhhhhhhl
Query fevvlsgqerdgvaLADQVKSIAWraRGATKKgtvapeelqlikakinvlig  103
ident                                                     
Sbjct ..............KDGTELELKE..NDIKSG................pssg   68
DSSP  ..............LLLLEEEEEL..LLEELL................llll


No 15: 2E6ZA  MOLECULE: TRANSCRIPTION ELONGATION FACTOR SPT5;                      

DSSP  ..llllLLLLLEEEEEEL.lllEEEEEELLLhhhhhhHLLEEEEEEElllllllleeeel
Query ..vsryVPDMGDLIWVDF.dpgHRPAVVLSPfmynnkTGMCLCVPCTtqskgypfevvls   57
ident           ||   |            ||              |               
Sbjct gssgssGFQPGDNVEVCEgeliNLQGKILSV.....dGNKITIMPKH.............   42
DSSP  llllllLLLLLLEEEELLllllLLEEEELLL.....lLLEEEEEELL.............


DSSP  llllleeeeLLLLEEELHhhHLLEEEeellhhhhhhhhhhhhhhhl
Query gqerdgvalADQVKSIAWraRGATKKgtvapeelqlikakinvlig  103
ident                         |                     
Sbjct .......edLKDMLEFPA..QELRKY....................   59
DSSP  .......llLLLLEEEEL..LLEEEL....................


No 16: 2DYBA  MOLECULE: NEUTROPHIL CYTOSOL FACTOR 4;                               

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct aesdfeqlpddvaisaniadieekrgftshfvfvievktkggskyliyrryrqfhalqsk   60
DSSP  lhhhhhlllllleeeeeeeeeeeeellleeeeeeeeeeelllleeeeeeehhhhhhhhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct leerfgxtlptlpakvyvgvkqeiaemripalnaymksllslpvwvlmdedvriffyqsp  120
DSSP  hhhhllllllllllllllllhhhhhhhhhhhhhhhhhhhhhllhhhhllhhhhhhhlllh


DSSP  ...........llllllllLEEEEEELL...........lLEEEEEELLlhhhHHHHLLE
Query ...........vsryvpdmGDLIWVDFD...........pGHRPAVVLSpfmyNNKTGMC   38
ident                           ||                   ||           
Sbjct ydseqvpqalrrlrprrmaAPRAEALFDftgnsklelnfkAGDVIFLLS....RINKDWL  176
DSSP  hhhhhhhhhhhhhllllllLLEEEELLLllllllllllllLLLEEEEEE....ELLLLEE


DSSP  EEEEeelllllllleeeelllllleeeeLLLLEEELHHhhLLEEEEE.......lLHHHh
Query LCVPcttqskgypfevvlsgqerdgvalADQVKSIAWRarGATKKGT.......vAPEEl   91
ident                                                             
Sbjct EGTV........................RGATGIFPLS..FVKILKDfpeeddptNWLR.  209
DSSP  EEEE........................LLEEEEEEHH..HEEEEELllllllllEEEE.


DSSP  hhhhhHHHH...................................................
Query qlikaKINV...................................................  100
ident                                                             
Sbjct ....cYYYEdtistikdiaveedlsstpllkdlleltrrefqredialnyrdaegdlvrl  265
DSSP  ....eEEELllleeeeeeeelllllllllhhhhhhhhhhhhlllleeeeeellllleeel


DSSP  ..............................hhl
Query ..............................lig  103
ident                                  
Sbjct lsdedvalmvrqarglpsqkrlfpwklhitqkd  298
DSSP  llhhhhhhhhhhhllllllllllllleeeeell


No 17: 1IXDA  MOLECULE: CYLINDROMATOSIS TUMOUR-SUPPRESSOR CYLD;                    

DSSP  ...........LLLL.LLLLLEEEEEELLlLEEEEEELL.lhhhhhHHLLEEEEEEElll
Query ...........VSRY.VPDMGDLIWVDFDpGHRPAVVLS.pfmynnKTGMCLCVPCTtqs   47
ident                     | |  |         |                        
Sbjct gssgssglampPGNShGLEVGSLAEVKEN.PPFYGVIRWigqppglNEVLAGLELED...   56
DSSP  lllllllllllLLLLlLLLLLLEEEELLL.LLLLEEEEEeelllllLLLEEEEEELL...


DSSP  llllleeeelllllleeeELLLLEEELHHhhLLEEEEellhhhhhhhhhhhhhhhl
Query kgypfevvlsgqerdgvaLADQVKSIAWRarGATKKGtvapeelqlikakinvlig  103
ident                                                         
Sbjct ecagctdgtfrgtryftcALKKALFVKLK..SCRPDS......rfaslqpsgpssg  104
DSSP  lllllllleelleellllLLLLLEEEEHH..HEEELL......lllllllllllll


No 18: 2GCXA  MOLECULE: FERROUS IRON TRANSPORT PROTEIN A;                          

DSSP  lllLLLLLLEEEEEELL.................lLEEEEEELLLHHhhhHHLLEEEEEe
Query vsrYVPDMGDLIWVDFD.................pGHRPAVVLSPFMynnKTGMCLCVPc   43
ident                                          |                  
Sbjct ...MQFTPDSAWKITGFsrdispayrqkllslgmlPGSSFHVVRVAP...LGDPVHIET.   53
DSSP  ...LLLLLLLEEEEELLlllllhhhhhhhllllllLLEEEEELLLLL...LLLEEEEEE.


DSSP  elllllllleeeelllllleeeeLLLLEEEL...hhHHLLEEEeellhhhhhhhhhhhhh
Query ttqskgypfevvlsgqerdgvalADQVKSIA...wrARGATKKgtvapeelqlikakinv  100
ident                                                             
Sbjct .......................RRVSLVLRkkdlaLIELEAV.................   73
DSSP  .......................LLEEEEEElllllLLEEEEL.................


DSSP  hhl
Query lig  103
ident    
Sbjct .aq   75
DSSP  .ll


No 19: 2DK3A  MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE HECTD1;                        

DSSP  .......LLLLL...LLLLEEEEEE..LLLL......eeEEEELLLhhhHHHHlLEEEEE
Query .......VSRYV...PDMGDLIWVD..FDPG......hrPAVVLSPfmyNNKTgMCLCVP   42
ident        |   |      |                       |                 
Sbjct gssgssgVRSQVlkyMVPGARVIRGldWKWRdqdgspqgEGTVTGE...LHNG.WIDVTW   56
DSSP  lllllllLLLLHhhlLLLLLEEEELllLLLLllllllllLEELLLL...LLLL.EEEEEE


DSSP  eelllllllleeeelllllleeEELLlLEEELHH...HHLLEEEEellhhhhhhhhhhhh
Query cttqskgypfevvlsgqerdgvALADqVKSIAWR...ARGATKKGtvapeelqlikakin   99
ident                              |                              
Sbjct ......................DAGG.SNSYRMGaegKFDLKLAP...........gysg   82
DSSP  ......................LLLE.EEEEELLlllLLLEEELL...........llll


DSSP  hhhl
Query vlig  103
ident     
Sbjct pssg   86
DSSP  llll


No 20: 2HEQA  MOLECULE: YORP PROTEIN;                                              

DSSP  ......llllLLLLLEEEEEEL.......llLEEEEEELLlhhhhhHHLL.EEEEEEEll
Query ......vsryVPDMGDLIWVDF.......dpGHRPAVVLSpfmynnKTGM.CLCVPCTtq   46
ident               |                  |                       |  
Sbjct magdplpkywSYPVGLAVEINNnarygcphhVGRKGKIIE...hlhSATYdYAVSDET..   55
DSSP  llllllllllLLLLLLEEEELLlllllllllLLLEEEEEE...ellLLLLlEEEEELL..


DSSP  lllllleeeelllllleeeellLLEEELHHhhLLEEEEellhhhhhhhhhhhhhhhl
Query skgypfevvlsgqerdgvaladQVKSIAWRarGATKKGtvapeelqlikakinvlig  103
ident                                   |                      
Sbjct .....................gDITYFKEH..ELTPLK.....gglayvlehhhhhh   84
DSSP  .....................lLEEEELHH..HEEELL.....llllllllllllll


No 21: 1ZQ1A  MOLECULE: GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT D;             

DSSP  ......llllllllleEEEEEL..LLLEEEEE.ELLLhhhhhHHLLEEEEEeelllllll
Query ......vsryvpdmgdLIWVDF..DPGHRPAV.VLSPfmynnKTGMCLCVPcttqskgyp   51
ident                                     |                       
Sbjct rvdeflkerninvgdfVRITKEedGEEVTYEGyIXPP.yelsAGDTLVLKL.........   50
DSSP  lhhhhhhhllllllleEEEEEEllLLEEELLEeELLL.llllLLLEEEEEE.........


DSSP  leeeelllllleeEELLlLEEELhHHHLLEEEEELLHH......................
Query fevvlsgqerdgvALADqVKSIAwRARGATKKGTVAPE......................   89
ident                      ||                                     
Sbjct .............ENGY.NIGIA.LEKIRRIEVLERAKvkpevhfealiegkpglpevti   95
DSSP  .............LLLL.EEEEE.HHHEEEEEEEELLLlllllllllllllllllleeee


DSSP  ......hhhhhhHHHHH...........................................
Query ......elqlikAKINV...........................................  100
ident                                                             
Sbjct igtggtiasridYETGAvypaftaeelakalpeifevanvkpkllfnifsedxkpkhwvk  155
DSSP  eelllllleeeeLLLLEeeelllhhhhhhhlhhhhhlleeeeeelllllhhhllhhhhhh


DSSP  ............................................................
Query ............................................................  100
ident                                                             
Sbjct iahevakalnsgdygvvvahgtdtxgytaaalsfxlrnlgkpvvlvgaqrssdrpssdaa  215
DSSP  hhhhhhhhhhlllleeeeelllllhhhhhhhhhhheellllleeeellllllllllllhh


DSSP  ............................................................
Query ............................................................  100
ident                                                             
Sbjct xnlicsvrxatsevaevxvvxhgetgdtyclahrgtkvrkxhtsrrdafrsindvpiaki  275
DSSP  hhhhhhhhhhlllllleeeeeellllllleeeeellleeelllllllleeelllllleee


DSSP  ............................................................
Query ............................................................  100
ident                                                             
Sbjct wpngeieflrkdyrkrsdeevevddkieekvalvkvypgisseiidflvdkgykgivieg  335
DSSP  llllleeellllllllllllleellllllleeeeelllllllhhhhhhhhlllleeeeee


DSSP  ............................................................
Query ............................................................  100
ident                                                             
Sbjct tglghtpndiipsieraveegvavcxtsqciygrvnlnvystgrkllkagvipcedxlpe  395
DSSP  lllllllhhhhhhhhhhhhllleeeeeellllllllllllhhhhhhhhllleelllllhh


DSSP  .......................................hhl
Query .......................................lig  103
ident                                           
Sbjct tayvklxwvlghtqnleevrkxxltnyageitpytrfdtylr  437
DSSP  hhhhhhhhhhlllllhhhhhhhhhllllllllllllllllll


No 22: 1Y71A  MOLECULE: KINASE-ASSOCIATED PROTEIN B;                               

DSSP  llllLLLLLEEEEEELLLLEEEEEELLlhhhhhhHLLEEEEEEElllllllleeeellll
Query vsryVPDMGDLIWVDFDPGHRPAVVLSpfmynnkTGMCLCVPCTtqskgypfevvlsgqe   60
ident         |         |     |          |                        
Sbjct ....TFEIGEIVTGIYKTGKYIGEVTN.....srPGSYVVKVLA.........vlkhpvq   42
DSSP  ....LLLLLLEEEEEELLEEEEEEEEE.....eeLLEEEEEEEE.........eeellll


DSSP  lleeeellLLEEELHHhhLLEEEE..........................ellhhhhhhh
Query rdgvaladQVKSIAWRarGATKKG..........................tvapeelqli   94
ident             |        |                                      
Sbjct erralafrEQTNIPEQ..XVKKYEgeipdyteslklaletqxnsfseddspfaersletl  100
DSSP  llllllllLEEEEEHH..HEEELLlllllhhhhhhhhhhhhhhlllllllhhhhhhhhhh


DSSP  hhhhhhhhl
Query kakinvlig  103
ident          
Sbjct qqlkkdykl  109
DSSP  hhhhhhlll


No 23: 1PNJA  MOLECULE: PHOSPHATIDYLINOSITOL 3-KINASE P85-ALPHA SUBUNIT            

DSSP  llllllllLEEEEEELL...........lLEEEEEEL....lLHHH.......hhhHLLE
Query vsryvpdmGDLIWVDFD...........pGHRPAVVL....sPFMY.......nnkTGMC   38
ident         |       |                  |                     |  
Sbjct ..gsmsaeGYQYRALYDykkereedidlhLGDILTVNkgslvALGFsdgqeakpeeIGWL   58
DSSP  ..llllllLLEEEELLLllllllllllllLLLEEELLlllhhHLLLllllllllllLLEE


DSSP  EEEEEElllllllleeeelllllleeeelLLLEEELHHhhLLEEEEELLHhhhhhhhhhh
Query LCVPCTtqskgypfevvlsgqerdgvalaDQVKSIAWRarGATKKGTVAPeelqlikaki   98
ident      |                                       |              
Sbjct NGYNET......................tGERGDFPGT..YVEYIGRKKI..........   84
DSSP  EEEELL......................lLEEEEEELL..LEEEEELLLL..........


DSSP  hhhhl
Query nvlig  103
ident      
Sbjct ...sp   86
DSSP  ...ll


No 24: 1KHCA  MOLECULE: DNA CYTOSINE-5 METHYLTRANSFERASE 3B2;                      

DSSP  ..llllLLLLLEEEEEEL.LLLEEEEEELL...lhhhhhHHLLEEEEEEellllllllee
Query ..vsryVPDMGDLIWVDF.DPGHRPAVVLS...pfmynnKTGMCLCVPCttqskgypfev   54
ident           ||| |         || | |           ||                 
Sbjct eyqddkEFGIGDLVWGKIkGFSWWPAMVVSwkatskrqaMPGMRWVQWF...........   49
DSSP  llllllLLLLLLEEEEEElLLEEEEEEEELhhhllllllLLLEEEEEEL...........


DSSP  eelllllleEEELllLEEELHHhhLLEEEE..............................
Query vlsgqerdgVALAdqVKSIAWRarGATKKG..............................   84
ident                   |          |                              
Sbjct .........GDGK..FSEISAD..KLVALGlfsqhfnlatfnklvsyrkamyhtlekarv   96
DSSP  .........LLLL..EEEEEHH..HLEELLlhhhhllhhhhhhlhhhhhhhhhhhhhhhh


DSSP  ....................ellhhhhhhhhhhhhhhhl
Query ....................tvapeelqlikakinvlig  103
ident                                        
Sbjct ragktfssspgesledqlkpmlewahggfkptgieglkp  135
DSSP  hhlllllllllllhhhhhhhhhhhhhllllllhhhhhll


No 25: 1UMUA  MOLECULE: UMUD';                                                     

DSSP  ...........................................llLLLLLLLEEEEEEll
Query ...........................................vsRYVPDMGDLIWVDfd   17
ident                                                    ||       
Sbjct dyveqridlnqlliqhpsatyfvkasgdsxidggisdgdllivdsAITASHGDIVIAAvd   60
DSSP  llllllllhhhhhlllhhheeeeellllllhhhlllllleeeeelLLLLLLLLEEEEEel


DSSP  lLEEEEEELLLhhhhhhhllEEEEEEElllllllleeeelllllleeeelLLLEEE.lhh
Query pGHRPAVVLSPfmynnktgmCLCVPCTtqskgypfevvlsgqerdgvalaDQVKSI.awr   76
ident                         |                              |    
Sbjct gEFTVKKLQLR.......ptVQLIPXN.....................saYSPITIssed   92
DSSP  lEEEEEEEELL.......llLEEELLL.....................llLLLEELllll


DSSP  HHLLEEEEellhhhhhhhhhhhhhhhl
Query ARGATKKGtvapeelqlikakinvlig  103
ident                            
Sbjct TLDVFGVV..............ihvvk  105
DSSP  LEEEEEEE..............eeeel