DaliLite: Structural Neighbours

Query: 1RZNA MOLECULE: RECOMBINATION PROTEIN U;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1ZP7-A 29.2  0.3  150   153  100   RECOMBINATION PROTEIN U;                                   "         
-

No 1: 1ZP7A  MOLECULE: RECOMBINATION PROTEIN U;                                   

DSSP  LHHHHHHHHHHHHHHLLLLEEEELLLLEEL..LEELLLLLLLEEEEELLEEEEEEEEELL
Query TLEDDLNETNKYYLTNQIAVIHKKPTPVQI..AYFKQSSTTDYNGIYKGRYIDFEAKETK   58
ident ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct TLEDDLNETNKYYLTNQIAVIHKKPTPVQIvnAYFKQSSTTDYNGIYKGRYIDFEAKETK   60
DSSP  LHHHHHHHHHHHHHHLLLLEEEELLLLLLLllLLLLLLLLLLEEEEELLEEEEEEEEELL


DSSP  LLLEEEHHHLLHHHHHHHHHHHHLLLEEEEEEEELLEEEEEEHHHHHHHHHHHHHHLLLE
Query NKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKEKNGRKS  118
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct NKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKEKNGRKS  120
DSSP  LLLEEEHHHLLHHHHHHHHHHHHLLLEEEEEEEELLEEEEEEHHHHHHHHHHHHLLLLLE


DSSP  EEHHHHHHHLEELLLLLLLLLLHHHHHHHHHL.
Query IRKDELEETAYPISLGYAPRIDYISIIEQLYF.  150
ident |||||||||||||||||||||||||||||||| 
Sbjct IRKDELEETAYPISLGYAPRIDYISIIEQLYFs  153
DSSP  EEHHHHHHHLEELLLLLLLLLLHHHHHHHHHLl