DaliLite: Structural Neighbours

Query: 1RXDB MOLECULE: PROTEIN TYROSINE PHOSPHATASE TYPE IVA, MEMBER 1;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1X24-A 29.8  0.5  152   152   98   PROTEIN TYROSINE PHOSPHATASE 4A1;                          "         
-

No 1: 1X24A  MOLECULE: PROTEIN TYROSINE PHOSPHATASE 4A1;                          

DSSP  LEEEEELLEEEEELLLLLLLLHHHHHHHHHHLLEEEEEELLLLLLLLHHHHHLLLEEEEL
Query PVEVTYKNXRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDW   60
ident |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct PVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDW   60
DSSP  LEEEEELLEEEEEELLLLLLLHHHHHHHHHHLLEEEEEELLLLLLLLHHHHLLLLEEEEL


DSSP  LLLLLLLLLHHHHHHHHHHHHHHHHHLLLLEEEEELLLLLLLHHHHHHHHHHHLLLLHHH
Query PFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGXKYED  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct PFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYED  120
DSSP  LLLLLLLLLLHHHHHHHHHHHHHHHHLLLLEEEEELLLLLLLHHHHHHHHHHHLLLLHHH


DSSP  HHHHHHLLLLLLLLHHHHHHHLLLLLLLLLLL
Query AVQFIRQKRRGAFNSKQLLYLEKYRPKXRLRF  152
ident ||||||||||||||||||||||||||| ||||
Sbjct AVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF  152
DSSP  HHHHHHHHHLLLLLHHHHHHHHHLLLLLLLLL