DaliLite: Structural Neighbours

Query: 1RH7E MOLECULE: RESISTIN-LIKE BETA;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1RH7-A 12.4  0.6   81    81  100   RESISTIN-LIKE BETA;                                        "         
   2:  1RGX-A 11.5  3.0   81    89   40   RESISTIN;                                                  "         
   3:  1ZHQ-A  2.3  2.2   39   113    5   MANNAN-BINDING LECTIN;                                     "         
-

No 1: 1RH7A  MOLECULE: RESISTIN-LIKE BETA;                                        

DSSP  LLLLLLLLLLLLHHHHLLLLLLEEEEEEEEELLEEELLLLLEEEEEEELLLLLLEEEELL
Query CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNG   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNG   60
DSSP  LLLLHHHHHHHLLLLLLLLLLLEEEEEEEEELLEEELLLLLEEEEEEEHHHLLLEEEELL


DSSP  LEEEELLLLLLEEEEEEEEEL
Query NTCHCQCSVMDWASARCCRMA   81
ident |||||||||||||||||||||
Sbjct NTCHCQCSVMDWASARCCRMA   81
DSSP  LEEEELLLLLLEEEEEEEEEL


No 2: 1RGXA  MOLECULE: RESISTIN;                                                  

DSSP  ..LLLLLLLLLLLLHHHHLL...LLLLEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE
Query ..CSFESLVDQRIKEALSRQ...EPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSW   55
ident                              |  | | | ||||| |  |  | ||  ||||
Sbjct cpIDEAIDKKIKQDFNSLFPnaiKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSW   60
DSSP  llHHHHHHHHHHHHHHHHHHhhhLLEEEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE


DSSP  EEELLLEEEELLLLLLEEEEEEEEEL...
Query DIRNGNTCHCQCSVMDWASARCCRMA...   81
ident |||    |||||   ||  ||||      
Sbjct DIREEKVCHCQCARIDWTAARCCKLQvas   89
DSSP  EEELLLEEEELLLLLLEEEEEEEEEEell


No 3: 1ZHQA  MOLECULE: MANNAN-BINDING LECTIN;                                     

DSSP  llllllllllllhhhhlllllLEEEEEEEEELL..........eeELLL.LLEEE.EEEE
Query csfeslvdqrikealsrqepkTISCTSVTSSGR..........laSCPA.GMVVT.GCAC   48
ident                                                 |     |     
Sbjct .....................ASYKVNIPAGPLwsnaeaqqvgpkIAAAhQGNFTgQWTT   39
DSSP  .....................LEEEEEEEEELLllhhhhhhhhhhHHHHlLLEEEeEEEE


DSSP  LLlllleeeellleeeellllLLEEEEEEEEEL...........................
Query GYgcgswdirngntchcqcsvMDWASARCCRMA...........................   81
ident                                                             
Sbjct VV..................eSAMSVVEVELQVentgihefktdvlagplwsndeaqklg   81
DSSP  EE..................lLLEEEEEEEEELlllllleeeeeeeeellllhhhhhhhh


DSSP  ................................
Query ................................   81
ident                                 
Sbjct pqiaasygaeftgqwrtivegvmsviqikytf  113
DSSP  hhhhhlllleeeeeeeeeellleeeeeeeeel