DaliLite: Structural Neighbours

Query: 1RH7C MOLECULE: RESISTIN-LIKE BETA;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1RH7-A 13.3  0.9   81    81  100   RESISTIN-LIKE BETA;                                        "         
   2:  1RGX-A 12.8  3.0   81    89   40   RESISTIN;                                                  "         
   3:  2P4E-A  5.4  7.8   69   494   23   PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9;             "         
   4:  1XRS-B  2.4  2.1   37   212    8   D-LYSINE 5,6-AMINOMUTASE ALPHA SUBUNIT;                    "         
-

No 1: 1RH7A  MOLECULE: RESISTIN-LIKE BETA;                                        

DSSP  LLLLHHHHHHHHHHLLLLLLLLEEEEEEEEELLEEELLLLLEEEEEEELLLLLLEEEELL
Query CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNG   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNG   60
DSSP  LLLLHHHHHHHLLLLLLLLLLLEEEEEEEEELLEEELLLLLEEEEEEEHHHLLLEEEELL


DSSP  LEEEELLLLLLEEEEEEEEEL
Query NTCHCQCSVMDWASARCCRMA   81
ident |||||||||||||||||||||
Sbjct NTCHCQCSVMDWASARCCRMA   81
DSSP  LEEEELLLLLLEEEEEEEEEL


No 2: 1RGXA  MOLECULE: RESISTIN;                                                  

DSSP  ..LLLLHHHHHHHHHHLLLL...LLLLEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE
Query ..CSFESLVDQRIKEALSRQ...EPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSW   55
ident                              |  | | | ||||| |  |  | ||  ||||
Sbjct cpIDEAIDKKIKQDFNSLFPnaiKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSW   60
DSSP  llHHHHHHHHHHHHHHHHHHhhhLLEEEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE


DSSP  EEELLLEEEELLLLLLEEEEEEEEEL...
Query DIRNGNTCHCQCSVMDWASARCCRMA...   81
ident |||    |||||   ||  ||||      
Sbjct DIREEKVCHCQCARIDWTAARCCKLQvas   89
DSSP  EEELLLEEEELLLLLLEEEEEEEEEEell


No 3: 2P4EA  MOLECULE: PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9;             

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct sipwnleritppryraggslvevylldtsiqsdhreiegrvmvtdfenvpeedqaskcds   60
DSSP  lllhhhhhllllllllllllleeeeeellllllllllllleeeeeeelllllllhhhhlh


DSSP  .................LLLL.......................................
Query .................CSFE.......................................    4
ident                                                             
Sbjct hgthlagvvsgrdagvaKGASmrslrvlncqgkgtvsgtliglefirksqlvqpvgplvv  120
DSSP  hhhhhhhhhhlllllllLLLEeeeeelllllleeehhhhhhhhhhhhhhhhhllllleee


DSSP  ............................................................
Query ............................................................    4
ident                                                             
Sbjct llplaggysrvlnaacqrlaragvvlvtaagnfrddaclyspasapevitvgatnaqdqp  180
DSSP  eeleeeellhhhhhhhhhhhhllleeeeelllllllhhheellllllleeeeeellllll


DSSP  ..................................................hhhhHHHHHH
Query ..................................................slvdQRIKEA   14
ident                                                             
Sbjct vtlgtlgtnfgrcvdlfapgediigassdcstcfvsqsgtsqaaahvagiaammLSAEPE  240
DSSP  leelleelllllllleeeellleeeellllllleeeellhhhhhhhhhhhhhhhHHHLLL


DSSP  L...........................................................
Query L...........................................................   15
ident |                                                           
Sbjct Ltlaelrqrlihfsakdvineawfpedqrvltpnlvaalppsthwqlfcrtvwsahsgpt  300
DSSP  Llhhhhhhhhhhhleellllhhhllhhhlllllleellllllllllleeeeeelllllll


DSSP  ............................................................
Query ............................................................   15
ident                                                             
Sbjct rmataiarcapdeellscssfsrsgkrrgermeaqggklvcrahnafggegvyaiarccl  360
DSSP  llleeeelllllleeeeeeeellllleeeeeeeelllleeeeeeellllllleeeeeeee


DSSP  ..........................................................ll
Query ..........................................................sr   17
ident                                                             
Sbjct lpqancsvhtappaeasmgtrvhchqqghvltgcsshwevedlgpnqcvghreasihasc  420
DSSP  lllleeeeeeelllllllleeeellllleeeeeeeeellllllllleeeelllleeeeee


DSSP  lllLLEEEEEEEEEL......LEEELLLLLEEEEEEELLL...LLLEEEElLLEEEELLL
Query qepKTISCTSVTSSG......RLASCPAGMVVTGCACGYG...CGSWDIRnGNTCHCQCS   68
ident        |                 |  |   |||    |            |||     
Sbjct chaPGLECKVKEHGIpapqeqVTVACEEGWTLTGCSALPGtshVLGAYAV.DNTCVVRSR  479
DSSP  eelLLEEEEEEEEEEelllleEEEELLLLLEEEEEEELLLlllEEEEEEE.LLEEEEEEL


DSSP  ..llLEEEEEEEEEL
Query ..vmDWASARCCRMA   81
ident       | | |||  
Sbjct seeaVTAVAICCRSR  494
DSSP  llleEEEEEEEEEEL


No 4: 1XRSB  MOLECULE: D-LYSINE 5,6-AMINOMUTASE ALPHA SUBUNIT;                    

DSSP  llllhhhhhhhhhhllllllllEEEEEEEEELLE......eELLL.......LLEEEEEE
Query csfeslvdqrikealsrqepktISCTSVTSSGRL......aSCPA.......GMVVTGCA   47
ident                           | |                          |    
Sbjct ......................KVQLSFTLPLKNnersaeaAKQIalkmgleEPSVVMQQ   38
DSSP  ......................LEEEEEEELLLLlhhhhhhHHHHhhlllllLLEEEEEE


DSSP  ELllllleeeellleeeellllLLEEEEEEEEE...........................
Query CGygcgswdirngntchcqcsvMDWASARCCRM...........................   80
ident                                                             
Sbjct SL...................dEEFTFFVVYGNeilsmeetdeyikenigrkivvvgast   79
DSSP  EE...................eLLEEEEEEEELllllhhhhhhhhhhhlllleeeeeeel


DSSP  ............................................................
Query ............................................................   80
ident                                                             
Sbjct gtdahtvgidaimnmkgyaghygleryemidaynlgsqvanedfikkaveleadvllvsq  139
DSSP  llllllhhhhhhhllllllllllhhhllleeeeellllllhhhhhhhhhhlllleeeeel


DSSP  ............................................................
Query ............................................................   80
ident                                                             
Sbjct tvtqknvhiqnmthlielleaeglrdrfvllcggprinneiakelgydagfgpgrfaddv  199
DSSP  llllllhhhhhhhhhhhhhhhlllhhhleeeeelllllhhhhhllllleeelllllhhhh


DSSP  ............l
Query ............a   81
ident              
Sbjct atfavktlndrmn  212
DSSP  hhhhhhhhhhhhl