DaliLite: Structural Neighbours

Query: 1RH7A MOLECULE: RESISTIN-LIKE BETA;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1RH7-A 15.2  0.0   81    81  100   RESISTIN-LIKE BETA;                                        "         
   2:  1RGX-A 12.9  3.0   80    89   41   RESISTIN;                                                  "         
   3:  2P4E-A  2.3  8.3   66   494    6   PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9;             "         
-

No 1: 1RH7A  MOLECULE: RESISTIN-LIKE BETA;                                        

DSSP  LLLLHHHHHHHLLLLLLLLLLLEEEEEEEEELLEEELLLLLEEEEEEEHHHLLLEEEELL
Query CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNG   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNG   60
DSSP  LLLLHHHHHHHLLLLLLLLLLLEEEEEEEEELLEEELLLLLEEEEEEEHHHLLLEEEELL


DSSP  LEEEELLLLLLEEEEEEEEEL
Query NTCHCQCSVMDWASARCCRMA   81
ident |||||||||||||||||||||
Sbjct NTCHCQCSVMDWASARCCRMA   81
DSSP  LEEEELLLLLLEEEEEEEEEL


No 2: 1RGXA  MOLECULE: RESISTIN;                                                  

DSSP  ..lLLLHH.HHHHHLLLLLLL..LLLLEEEEEEEEELLEEELLLLLEEEEEEEHHHLLLE
Query ..cSFESL.VDQRIKEALSRQ..EPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSW   55
ident                  |           |  | | | ||||| |  |  | ||  ||||
Sbjct cpiDEAIDkKIKQDFNSLFPNaiKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSW   60
DSSP  llhHHHHHhHHHHHHHHHHHHhhLLEEEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE


DSSP  EEELLLEEEELLLLLLEEEEEEEEEL...
Query DIRNGNTCHCQCSVMDWASARCCRMA...   81
ident |||    |||||   ||  ||||      
Sbjct DIREEKVCHCQCARIDWTAARCCKLQvas   89
DSSP  EEELLLEEEELLLLLLEEEEEEEEEEell


No 3: 2P4EA  MOLECULE: PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9;             

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct sipwnleritppryraggslvevylldtsiqsdhreiegrvmvtdfenvpeedqaskcds   60
DSSP  lllhhhhhllllllllllllleeeeeellllllllllllleeeeeeelllllllhhhhlh


DSSP  .................LLLL.......................................
Query .................CSFE.......................................    4
ident                                                             
Sbjct hgthlagvvsgrdagvaKGASmrslrvlncqgkgtvsgtliglefirksqlvqpvgplvv  120
DSSP  hhhhhhhhhhlllllllLLLEeeeeelllllleeehhhhhhhhhhhhhhhhhllllleee


DSSP  ............................................................
Query ............................................................    4
ident                                                             
Sbjct llplaggysrvlnaacqrlaragvvlvtaagnfrddaclyspasapevitvgatnaqdqp  180
DSSP  eeleeeellhhhhhhhhhhhhllleeeeelllllllhhheellllllleeeeeellllll


DSSP  ...................................................hhhhHHHLL
Query ...................................................slvdQRIKE   13
ident                                                            |
Sbjct vtlgtlgtnfgrcvdlfapgediigassdcstcfvsqsgtsqaaahvagiaammlSAEPE  240
DSSP  leelleelllllllleeeellleeeellllllleeeellhhhhhhhhhhhhhhhhHHLLL


DSSP  L...........................................................
Query A...........................................................   14
ident                                                             
Sbjct Ltlaelrqrlihfsakdvineawfpedqrvltpnlvaalppsthwqlfcrtvwsahsgpt  300
DSSP  Llhhhhhhhhhhhleellllhhhllhhhlllllleellllllllllleeeeeelllllll


DSSP  ............................................................
Query ............................................................   14
ident                                                             
Sbjct rmataiarcapdeellscssfsrsgkrrgermeaqggklvcrahnafggegvyaiarccl  360
DSSP  llleeeelllllleeeeeeeellllleeeeeeeelllleeeeeeellllllleeeeeeee


DSSP  ..........................................................ll
Query ..........................................................ls   16
ident                                                             
Sbjct lpqancsvhtappaeasmgtrvhchqqghvltgcsshwevedlgpnqcvghreasihasc  420
DSSP  lllleeeeeeelllllllleeeellllleeeeeeeeellllllllleeeelllleeeeee


DSSP  lllLLLEEEEEEEEE....lLEEELLL..LLEEEEEE..eHHHLlLEEEELL.LEEEELL
Query rqePKTISCTSVTSS....gRLASCPA..GMVVTGCA..cGYGCgSWDIRNG.NTCHCQC   67
ident    |                                |                       
Sbjct chaPGLECKVKEHGIpapqeQVTVACEegWTLTGCSAlpgTSHV.LGAYAVDnTCVVRSR  479
DSSP  eelLLEEEEEEEEEEellllEEEEELLllLEEEEEEElllLLLE.EEEEEELlEEEEEEL


DSSP  lllLEEEEEEEEEL.
Query svmDWASARCCRMA.   81
ident           |    
Sbjct seeAVTAVAICCRSr  494
DSSP  lllEEEEEEEEEEEl