DaliLite: Structural Neighbours

Query: 1RFXC MOLECULE: RESISTIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1RGX-A 13.6  2.0   89    89  100   RESISTIN;                                                  "         
   2:  1RH7-A 12.7  2.9   81    81   41   RESISTIN-LIKE BETA;                                        "         
   3:  2P4E-A  4.8 10.4   75   494   12   PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9;             "         
   4:  2CZ8-A  3.3  3.0   48    67   10   TT0972 PROTEIN;                                            "         
   5:  2BYG-A  2.4  2.9   43    98    7   CHANNEL ASSOCIATED PROTEIN OF SYNAPSE-110;                 "         
   6:  1Q3O-A  2.3  3.4   46   104    7   SHANK1;                                                    "         
   7:  2BBD-A  2.2  4.5   73   323    4   COAT PROTEIN;                                              "         
   8:  1VE0-A  2.0  2.5   48   134    2   HYPOTHETICAL PROTEIN (ST2072);                             "         
-

No 1: 1RGXA  MOLECULE: RESISTIN;                                                  

DSSP  LHHHHHHHHHHHHHHHHHHHHHHLLEEEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE
Query CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSW   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSW   60
DSSP  LLHHHHHHHHHHHHHHHHHHHHHLLEEEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE


DSSP  EEELLLEEEELLLLLLEEEEEEEEEEELL
Query DIREEKVCHCQCARIDWTAARCCKLQVAS   89
ident |||||||||||||||||||||||||||||
Sbjct DIREEKVCHCQCARIDWTAARCCKLQVAS   89
DSSP  EEELLLEEEELLLLLLEEEEEEEEEEELL


No 2: 1RH7A  MOLECULE: RESISTIN-LIKE BETA;                                        

DSSP  lhhhHHHHHHHHHHHHHHHHHHhLLEEEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE
Query cpidEAIDKKIKQDFNSLFPNAiKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSW   60
ident             |                |  | | | ||||| |  |  | ||  ||||
Sbjct ....CSFESLVDQRIKEALSRQ.EPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSW   55
DSSP  ....LLLLHHHHHHHLLLLLLL.LLLLEEEEEEEEELLEEELLLLLEEEEEEEHHHLLLE


DSSP  EEELLLEEEELLLLLLEEEEEEEEEEell
Query DIREEKVCHCQCARIDWTAARCCKLQvas   89
ident |||    |||||   ||  ||||      
Sbjct DIRNGNTCHCQCSVMDWASARCCRMA...   81
DSSP  EEELLLEEEELLLLLLEEEEEEEEEL...


No 3: 2P4EA  MOLECULE: PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9;             

DSSP  LHHHhhhhhhHHHH..............................................
Query CPIDeaidkkIKQD..............................................   14
ident                                                             
Sbjct SIPWnleritPPRYraggslvevylldtsiqsdhreiegrvmvtdfenvpeedqaskcds   60
DSSP  LLLHhhhhllLLLLllllllleeeeeellllllllllllleeeeeeelllllllhhhhlh


DSSP  ............................................................
Query ............................................................   14
ident                                                             
Sbjct hgthlagvvsgrdagvakgasmrslrvlncqgkgtvsgtliglefirksqlvqpvgplvv  120
DSSP  hhhhhhhhhhlllllllllleeeeeelllllleeehhhhhhhhhhhhhhhhhllllleee


DSSP  ............................................................
Query ............................................................   14
ident                                                             
Sbjct llplaggysrvlnaacqrlaragvvlvtaagnfrddaclyspasapevitvgatnaqdqp  180
DSSP  eeleeeellhhhhhhhhhhhhllleeeeelllllllhhheellllllleeeeeellllll


DSSP  ............................................................
Query ............................................................   14
ident                                                             
Sbjct vtlgtlgtnfgrcvdlfapgediigassdcstcfvsqsgtsqaaahvagiaammlsaepe  240
DSSP  leelleelllllllleeeellleeeellllllleeeellhhhhhhhhhhhhhhhhhhlll


DSSP  .......................................hHHHHhhhhLLEEEEEEEE.E
Query .......................................fNSLFpnaiKNIGLNCWTV.S   34
ident                                          |                  
Sbjct ltlaelrqrlihfsakdvineawfpedqrvltpnlvaalpPSTH....WQLFCRTVWSaH  296
DSSP  llhhhhhhhhhhhleellllhhhllhhhlllllleellllLLLL....LLLEEEEEELlL


DSSP  EEL...LEEELLL.....LLEEeEEEELLlLLLEEEELL.......LEEEELLLlLLEEE
Query SRG...KLASCPE.....GTAVlSCSCGSaCGSWDIREE.......KVCHCQCArIDWTA   79
ident |       |              |    |       | |          |          
Sbjct SGPtrmATAIARCapdeeLLSC.SSFSRS.GKRRGERMEaqggklvCRAHNAFG.GEGVY  353
DSSP  LLLlllLEEEELLlllleEEEE.EEELLL.LLEEEEEEEelllleeEEEEELLL.LLLLE


DSSP  EEEEEEEELL..................................................
Query ARCCKLQVAS..................................................   89
ident |                                                           
Sbjct AIARCCLLPQancsvhtappaeasmgtrvhchqqghvltgcsshwevedlgpnqcvghre  413
DSSP  EEEEEEELLLleeeeeeelllllllleeeellllleeeeeeeeellllllllleeeelll


DSSP  ............................................................
Query ............................................................   89
ident                                                             
Sbjct asihascchapgleckvkehgipapqeqvtvaceegwtltgcsalpgtshvlgayavdnt  473
DSSP  leeeeeeeellleeeeeeeeeeelllleeeeellllleeeeeeelllllleeeeeeelle


DSSP  .....................
Query .....................   89
ident                      
Sbjct cvvrsrseeavtavaiccrsr  494
DSSP  eeeeelllleeeeeeeeeeel


No 4: 2CZ8A  MOLECULE: TT0972 PROTEIN;                                            

DSSP  lhhhhhhhhhhhhhhhhhhhhhHLLEEEEEEEEEEELL..EEEL............llLL
Query cpideaidkkikqdfnslfpnaIKNIGLNCWTVSSRGK..LASC............peGT   46
ident                        |          |      |                  
Sbjct ......................GKVYKKVELVGTSEEGleAAIQaalararktlrhldWF   38
DSSP  ......................LLEEEEEEEEEEELLLhhHHHHhhhhhhhhhllleeEE


DSSP  EEEEEEELLlllleeeellleeeellLLLLEEEEEEEEEEELL.
Query AVLSCSCGSacgswdireekvchcqcARIDWTAARCCKLQVAS.   89
ident  |                        |                 
Sbjct EVKEIRGTI...............geAGVKEYQVVLEVGFRLEe   67
DSSP  EEEEEEEEE...............elLEEEEEEEEEEEEEELLl


No 5: 2BYGA  MOLECULE: CHANNEL ASSOCIATED PROTEIN OF SYNAPSE-110;                 

DSSP  lhhhhhhhhhhhhhhhhhhhhhhlLEEEEEEEEEEEL.......................
Query cpideaidkkikqdfnslfpnaikNIGLNCWTVSSRG.......................   37
ident                                                             
Sbjct ........................FQSMTVVEIKLFKgpkglgfsiaggvgnqhipgdns   36
DSSP  ........................LEEEEEEEEEEELlllllleeeeellllllllllll


DSSP  .............leeeLLLLLEEEEEE.......ellllLLEEeellleeeellllLLE
Query .............klasCPEGTAVLSCS.......cgsacGSWDireekvchcqcarIDW   77
ident                     |   |                                   
Sbjct iyvtkiidggaaqkdgrLQVGDRLLMVNnysleevtheeaVAIL..........kntSEV   86
DSSP  eeeeeellllhhhhhllLLLLLEEEEELleelllllhhhhHHHH..........hllLLE


DSSP  EEEEEEEEEELL
Query TAARCCKLQVAS   89
ident       |     
Sbjct VYLKVGKPTTIY   98
DSSP  EEEEEEEEEELL


No 6: 1Q3OA  MOLECULE: SHANK1;                                                    

DSSP  lhhhhhhhhhhhhhhhhhhhhhhlLEEEEEEEEEEEL.......................
Query cpideaidkkikqdfnslfpnaikNIGLNCWTVSSRG.......................   37
ident                                ||                           
Sbjct ........................DYIIKEKTVLLQKkdsegfgfvlrgakaqtpieeft   36
DSSP  ........................LEEEEEEEEEEELllllllleeeeelllllllllll


DSSP  ....................leeeLLLLLEEEEEE....ellllLLEEeellleeEELLl
Query ....................klasCPEGTAVLSCS....cgsacGSWDireekvcHCQCa   73
ident                            |                                
Sbjct ptpafpalqylesvdeggvawragLRMGDFLIEVNgqnvvkvghRQVV......nMIRQ.   89
DSSP  lllllllleeeeeellllhhhhllLLLLLEEEEELleelllllhHHHH......hHHHH.


DSSP  lLLEEEEEEEEEEELl
Query rIDWTAARCCKLQVAs   89
ident                 
Sbjct gGNTLMVKVVMVTRH.  104
DSSP  lLLEEEEEEEEEELL.


No 7: 2BBDA  MOLECULE: COAT PROTEIN;                                              

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct geiytetlqqtyawtagtnipikiprnnfirkirvqligsisnsgtaavtlpsapfpynl   60
DSSP  leeeeeelllleellllleeeeeelllleeeeeeeeeeeeeeellllleelllllllhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct vqtfnlsyegsktlysvsgtglgilxyyttkgqnpaypapgtsvpasgsvnlnvxwefdl  120
DSSP  eeeeeeeellleeeeeeehhhhhhhhhhhlllllleellllleellleeeeeeeeeeeee


DSSP  ............................lhhhhhhhhhhHHHHHHHHH.......hHHLL
Query ............................cpideaidkkiKQDFNSLFP.......nAIKN   25
ident                                                             
Sbjct arfpatxvqniilsiltgqapsgvsinasfyitityervTAQEILSEGglgadgexPLAT  180
DSSP  eeelhhhllleeeeeeellllllleeeeeeeeeeeeeelLHHHHHHLLllllllllLLLL


DSSP  EEEEEEEEEEELL........EEELLLL..leeEEEEELL........LLLLEEEEL...
Query IGLNCWTVSSRGK........LASCPEG..tavLSCSCGS........ACGSWDIRE...   64
ident                       |    |                                
Sbjct VLPKVIEIPTFNVpassapihVAYLQPGqiykrQLVYVINstsginntDPTEYELKIvrg  240
DSSP  LEEEEEEEEEEEElllllleeEEELLLLleeeeEEEEEELllllllllLEEEEEEEElll


DSSP  ...................................................lLEEEELLL
Query ...................................................eKVCHCQCA   73
ident                                                             
Sbjct vptdkikvswaalqaenqaeyqvapysgasaiidfrkyfngdldlthapsdsIEYDLALQ  300
DSSP  lleeeeeeehhhhhhhhhhhhlllllllleeeeehhhllllleellllllllEEEEEEEL


DSSP  LLLEEEEEEEEEEELL.......
Query RIDWTAARCCKLQVAS.......   89
ident   |                    
Sbjct NQDNVYSLYVSYVLPYydqlaal  323
DSSP  LLEEEEEEEEEEELLLhhhhhll


No 8: 1VE0A  MOLECULE: HYPOTHETICAL PROTEIN (ST2072);                             

DSSP  lhhhhhhhhhhhhhhhhhhhhhhllEEEEEEEEEEEL.......leeeLLLLL.......
Query cpideaidkkikqdfnslfpnaiknIGLNCWTVSSRG.......klasCPEGT.......   46
ident                                                             
Sbjct .........................XKIISKEFTVKTrsrfdsiditeQVSEAikginng   35
DSSP  .........................LEEEEEEEEEELlllleeeelhhHHHHHlllllle


DSSP  .eeEEEEellllLLEEEEL.........................................
Query .avLSCScgsacGSWDIRE.........................................   64
ident                 |                                           
Sbjct iahVIVK....hTTCAIIIneaesglxkdflnwakklvppdgefehniidnnghahvisa   91
DSSP  eeeEEEL....lLLEEEEEelllhhhhhhhhhhhhhhlllllllhhhhllllhhhhhhhh


DSSP  .....................lLEEEELLllLLEEEEEEEEEEEll
Query .....................eKVCHCQCarIDWTAARCCKLQVas   89
ident                                               
Sbjct iignsrvvpiiegkldlgtwqrIILLEFD.gPRTRTVLVKSXGE..  134
DSSP  hhlleeeeeeelleelllllleEEEEELL.lLLEEEEEEEEEEL..