DaliLite: Structural Neighbours

Query: 1RFXB MOLECULE: RESISTIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1RGX-A 12.9  1.9   89    89  100   RESISTIN;                                                  "         
   2:  1RH7-A 12.4  4.0   81    81   41   RESISTIN-LIKE BETA;                                        "         
   3:  2P4E-A  7.2 10.9   77   494   26   PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9;             "         
   4:  1ZMQ-A  2.7  2.6   31    32   16   DEFENSIN 6;                                                "         
   5:  1Z1W-A  2.7  3.1   57   780    5   TRICORN PROTEASE INTERACTING FACTOR F3;                    "         
   6:  1XRS-B  2.4  2.1   37   212    8   D-LYSINE 5,6-AMINOMUTASE ALPHA SUBUNIT;                    "         
   7:  2BBD-A  2.1  4.4   73   323    5   COAT PROTEIN;                                              "         
-

No 1: 1RGXA  MOLECULE: RESISTIN;                                                  

DSSP  LHHHHHHHHHHHHHHHHHHHHHHHLLEEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE
Query CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSW   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSW   60
DSSP  LLHHHHHHHHHHHHHHHHHHHHHLLEEEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE


DSSP  EEELLLEEEELLLLLLEEEEEEEEEELLL
Query DIREEKVCHCQCARIDWTAARCCKLQVAS   89
ident |||||||||||||||||||||||||||||
Sbjct DIREEKVCHCQCARIDWTAARCCKLQVAS   89
DSSP  EEELLLEEEELLLLLLEEEEEEEEEEELL


No 2: 1RH7A  MOLECULE: RESISTIN-LIKE BETA;                                        

DSSP  lhhHHHHHHHHHHHHHHHHHHhhHLLEEEEEEEEEELLEEELLLLLEEEEEEELLLLLLE
Query cpiDEAIDKKIKQDFNSLFPNaiKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSW   60
ident                  |           |  | | | ||||| |  |  | ||  ||||
Sbjct ...CSFESLVDQRIKEALSRQ..EPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSW   55
DSSP  ...LLLLHHHHHHHLLLLLLL..LLLLEEEEEEEEELLEEELLLLLEEEEEEEHHHLLLE


DSSP  EEELLLEEEELLLLLLEEEEEEEEEElll
Query DIREEKVCHCQCARIDWTAARCCKLQvas   89
ident |||    |||||   ||  ||||      
Sbjct DIRNGNTCHCQCSVMDWASARCCRMA...   81
DSSP  EEELLLEEEELLLLLLEEEEEEEEEL...


No 3: 2P4EA  MOLECULE: PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9;             

DSSP  lhhHHHHHHHHhHHHHHH..........................................
Query cpiDEAIDKKIkQDFNSL..........................................   18
ident                                                             
Sbjct ...SIPWNLER.ITPPRYraggslvevylldtsiqsdhreiegrvmvtdfenvpeedqas   56
DSSP  ...LLLHHHHH.LLLLLLllllllleeeeeellllllllllllleeeeeeelllllllhh


DSSP  ............................................................
Query ............................................................   18
ident                                                             
Sbjct kcdshgthlagvvsgrdagvakgasmrslrvlncqgkgtvsgtliglefirksqlvqpvg  116
DSSP  hhlhhhhhhhhhhhlllllllllleeeeeelllllleeehhhhhhhhhhhhhhhhhllll


DSSP  ............................................................
Query ............................................................   18
ident                                                             
Sbjct plvvllplaggysrvlnaacqrlaragvvlvtaagnfrddaclyspasapevitvgatna  176
DSSP  leeeeeleeeellhhhhhhhhhhhhllleeeeelllllllhhheellllllleeeeeell


DSSP  ............................................................
Query ............................................................   18
ident                                                             
Sbjct qdqpvtlgtlgtnfgrcvdlfapgediigassdcstcfvsqsgtsqaaahvagiaammls  236
DSSP  llllleelleelllllllleeeellleeeellllllleeeellhhhhhhhhhhhhhhhhh


DSSP  ............................................HHHHhhlLEEEEEEEE
Query ............................................FPNAiknIGLNCWTVS   34
ident                                                      | | || 
Sbjct aepeltlaelrqrlihfsakdvineawfpedqrvltpnlvaalpPSTH...WQLFCRTVW  293
DSSP  hlllllhhhhhhhhhhhleellllhhhllhhhlllllleellllLLLL...LLLEEEEEE


DSSP  EEL........LEEELLLLLEEEEEEELL...lLLLEEEEL...LLEEEELLL...LLLE
Query SRG........KLASCPEGTAVLSCSCGS...aCGSWDIRE...EKVCHCQCA...RIDW   77
ident |            | |      ||||  |                 ||    |       
Sbjct SAHsgptrmatAIARCAPDEELLSCSSFSrsgkRRGERMEAqggKLVCRAHNAfggEGVY  353
DSSP  LLLllllllleEEELLLLLLEEEEEEEELllllEEEEEEEElllLEEEEEEELlllLLLE


DSSP  EEEEEEEE....................................................
Query TAARCCKL....................................................   85
ident   |||| |                                                    
Sbjct AIARCCLLpqancsvhtappaeasmgtrvhchqqghvltgcsshwevedlgpnqcvghre  413
DSSP  EEEEEEELllleeeeeeelllllllleeeellllleeeeeeeeellllllllleeeelll


DSSP  ............................................................
Query ............................................................   85
ident                                                             
Sbjct asihascchapgleckvkehgipapqeqvtvaceegwtltgcsalpgtshvlgayavdnt  473
DSSP  leeeeeeeellleeeeeeeeeeelllleeeeellllleeeeeeelllllleeeeeeelle


DSSP  .................elll
Query .................qvas   89
ident                      
Sbjct cvvrsrseeavtavaiccrsr  494
DSSP  eeeeelllleeeeeeeeeeel


No 4: 1ZMQA  MOLECULE: DEFENSIN 6;                                                

DSSP  lhhhhhhhhhhhhhhhhhhhhhhhllEEEEEEEeeelleEELLLLLEEEEEEElllllle
Query cpideaidkkikqdfnslfpnaikniGLNCWTVssrgklASCPEGTAVLSCSCgsacgsw   60
ident                              |          ||                  
Sbjct ..........................AFTCHCR......RSCYSTEYSYGTCT.......   21
DSSP  ..........................LEEEEEE......LLLLLLLEEEEEEE.......


DSSP  eeellleeeellllLLEEEEEEEEeelll
Query direekvchcqcarIDWTAARCCKlqvas   89
ident                      ||      
Sbjct .............vMGINHRFCCL.....   32
DSSP  .............eLLEEEEEEEL.....


No 5: 1Z1WA  MOLECULE: TRICORN PROTEASE INTERACTING FACTOR F3;                    

DSSP  lhhhhhhhhhhhhhhhhhhhhhhhLLEEEEEEeEEEL...LEEELLLLLEEEEEEELlll
Query cpideaidkkikqdfnslfpnaikNIGLNCWTvSSRG...KLASCPEGTAVLSCSCGsac   57
ident                                |               |            
Sbjct ..........mevekydltldfdiQKRTFNGTeTITAdagDIVLDAVGLQINWMKVN..g   48
DSSP  ..........lleeeeeeeeeeelLLLEEEEEeEEEElleEEEEELLLLEEEEEEEL..l


DSSP  LLEEEEL..lLEEEelLLLLLEEEEEEEEEELL...........................
Query GSWDIRE..eKVCHcqCARIDWTAARCCKLQVA...........................   88
ident            |                                                
Sbjct RDTAFTYdgqTVRApgDSQPQKIEISFAGKVSDslsgiyyagrengmitthfeatdarrm  108
DSSP  LEELLEElllEEEEeeELLLLEEEEEEEEELLLllleeeeellllleeeeelllllhhhl


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct fpcvdhpaykavfaitvvidkdydaisnmppkrievserkvvefqdtprmstyllyvgig  168
DSSP  llllllllllleeeeeeeelllleeeellleeeeeellleeeeelllllllhhhlleeee


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct kfryeyekyrdidlilaslkdirskypldmarksvefyenyfgipyalpkmhlisvpefg  228
DSSP  lleeeeeeelleeeeeeelllllllhhhhhhhhhhhhhhhhhllllllleeeeeeellll


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct agamenwgaitfreiymdiaensavtvkrnsanviaheiahqwfgdlvtmkwwndlwlne  288
DSSP  lleelllleeeeehhhhlllllllhhhhhhhhhhhhhhhhhlllllleellllllhhhhh


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct sfatfmsyktmdtlfpewsfwgdffvsrtsgalrsdslknthpievdvrdpdeisqifde  348
DSSP  hhhhhhhhhhhhhhlhhhlhhhhhhhhlhhhhhhhlllllllllllllllllllllllll


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct isygkgasilrmiedyagyeefrkgiskylndhkfgnaegsdlwtaiedvsgkpvkrvme  408
DSSP  lllhhhhhhhhhhhhhhlhhhhhhhhhhhhhhllleellhhhhhhhhhhhhlllhhhhhh


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct ywiknpgypviklkrngrkitmyqtrfllngeeegrwpvpvnikkkdgverilledeasi  468
DSSP  hhhhlllleeeeeeellleeeeeeeeelllleeelllleeeeeelllleeeeeellleee


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct eadglikinadsagfyrvlyddatfsdvmghyrdlspldriglvddlfafllsghidpet  528
DSSP  ellllleelhhhlllleeeelhhhhhhhhhlhhhllhhhhhhhhhhhhhhhhhllllhhh


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct yrqrirnffddedhnvitaivgqmeylrmlthafdddarafcrsrmqfltgkqdenlkia  588
DSSP  hhhhhhlllllllhhhhhhhhhhhhhhlllllllhhhhhhhhhhhhhhhlllllhhhhhh


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct lgrvsrlyvmvdesyaeemsklfkdfdsaepemrssiatayalvtgdlkgllekfrsvdr  648
DSSP  hhhhhhhhhhhlhhhhhhhhhhhhhlllllhhhhhhhhhhhhhhlllhhhhhhhhhllll


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct dedrvriisafgklksntdlstvygmvekteikkqdmisffssaletlpgrefifanldr  708
DSSP  lhhhhhhhhhhhhllllllllllllllllllllhhhlhhhhhhhlllhhhhhhhhhhhhh


DSSP  ............................................................
Query ............................................................   88
ident                                                             
Sbjct iirlviryftgnrtasrtvemmipvigldhpdaedivrnigsknismglakgiemlavnr  768
DSSP  lhhhhhhhlllllhhhhhhhhhhhhhllllllhhhhhhllllllhhhhhhhhhhhhhhhh


DSSP  ...........l
Query ...........s   89
ident             
Sbjct klverirqtavk  780
DSSP  hhhhhhllllll


No 6: 1XRSB  MOLECULE: D-LYSINE 5,6-AMINOMUTASE ALPHA SUBUNIT;                    

DSSP  lhhhhhhhhhhhhhhhhhhhhhhhlleEEEEEEEEELLE......eELLL.......LLE
Query cpideaidkkikqdfnslfpnaiknigLNCWTVSSRGKL......aSCPE.......GTA   47
ident                                      |                      
Sbjct ...........................KVQLSFTLPLKNnersaeaAKQIalkmgleEPS   33
DSSP  ...........................LEEEEEEELLLLlhhhhhhHHHHhhlllllLLE


DSSP  EEEEEELllllleeeellleeeellllLLEEEEEEEEE......................
Query VLSCSCGsacgswdireekvchcqcarIDWTAARCCKL......................   85
ident |                             |                             
Sbjct VVMQQSL...................dEEFTFFVVYGNeilsmeetdeyikenigrkivv   74
DSSP  EEEEEEE...................eLLEEEEEEEELllllhhhhhhhhhhhlllleee


DSSP  ............................................................
Query ............................................................   85
ident                                                             
Sbjct vgastgtdahtvgidaimnmkgyaghygleryemidaynlgsqvanedfikkaveleadv  134
DSSP  eeeelllllllhhhhhhhllllllllllhhhllleeeeellllllhhhhhhhhhhlllle


DSSP  ............................................................
Query ............................................................   85
ident                                                             
Sbjct llvsqtvtqknvhiqnmthlielleaeglrdrfvllcggprinneiakelgydagfgpgr  194
DSSP  eeeelllllllhhhhhhhhhhhhhhhlllhhhleeeeelllllhhhhhllllleeellll


DSSP  ..............elll
Query ..............qvas   89
ident                   
Sbjct faddvatfavktlndrmn  212
DSSP  lhhhhhhhhhhhhhhhhl


No 7: 2BBDA  MOLECULE: COAT PROTEIN;                                              

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct geiytetlqqtyawtagtnipikiprnnfirkirvqligsisnsgtaavtlpsapfpynl   60
DSSP  leeeeeelllleellllleeeeeelllleeeeeeeeeeeeeeellllleelllllllhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct vqtfnlsyegsktlysvsgtglgilxyyttkgqnpaypapgtsvpasgsvnlnvxwefdl  120
DSSP  eeeeeeeellleeeeeeehhhhhhhhhhhlllllleellllleellleeeeeeeeeeeee


DSSP  ............................lhhhhhhhhhhHHHH.HHHHHH......HHHL
Query ............................cpideaidkkiKQDF.NSLFPN......AIKN   25
ident                                              |              
Sbjct arfpatxvqniilsiltgqapsgvsinasfyitityervTAQEiLSEGGLgadgexPLAT  180
DSSP  eeelhhhllleeeeeeellllllleeeeeeeeeeeeeelLHHHhHHLLLLllllllLLLL


DSSP  LEEEEEEEEEELL........EEELLLL..leeEEEEELL........LLLLEEEEL...
Query IGLNCWTVSSRGK........LASCPEG..tavLSCSCGS........ACGSWDIRE...   64
ident                       |    |                                
Sbjct VLPKVIEIPTFNVpassapihVAYLQPGqiykrQLVYVINstsginntDPTEYELKIvrg  240
DSSP  LEEEEEEEEEEEElllllleeEEELLLLleeeeEEEEEELllllllllLEEEEEEEElll


DSSP  ...................................................lLEEEELLL
Query ...................................................eKVCHCQCA   73
ident                                                             
Sbjct vptdkikvswaalqaenqaeyqvapysgasaiidfrkyfngdldlthapsdsIEYDLALQ  300
DSSP  lleeeeeeehhhhhhhhhhhhlllllllleeeeehhhllllleellllllllEEEEEEEL


DSSP  LLLEEEEEEEEEELL.......l
Query RIDWTAARCCKLQVA.......s   89
ident   |                    
Sbjct NQDNVYSLYVSYVLPyydqlaal  323
DSSP  LLEEEEEEEEEEELLlhhhhhll