DaliLite: Structural Neighbours

Query: 1PUGC MOLECULE: HYPOTHETICAL UPF0133 PROTEIN YBAB;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1YBX-A 11.9  1.2   80    91   29   CONSERVED HYPOTHETICAL PROTEIN;                            "         
-

No 1: 1YBXA  MOLECULE: CONSERVED HYPOTHETICAL PROTEIN;                            

DSSP  .........LHHHHHHHHHHHHHHLEEEEEELLLLEEEEEELLLLEEEEEELHHHLLL.L
Query .........QMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLED.D   50
ident            |      |||     |    | | | |   |        | |      |
Sbjct innlvkqaqKXQRDXERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPdD   60
DSSP  lhhhhhhhhHHHHHHHHHHHHHHHLEEEEEELLLLEEEEEELLLLEEEEEELHHHLLLlL


DSSP  HHHHHHHHHHHHHHHHHHHHHHHHLL.LLLL
Query KEMLEDLVAAAFNDAARRIEETQKEK.MASV   80
ident  | | ||  || | | |   |          
Sbjct VEXLQDLILAAVNEALRKADEXVTAEiSKIT   91
DSSP  HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHL