DaliLite: Structural Neighbours

Query: 1NKQD MOLECULE: HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1NKQ-A 43.7  0.6  244   247  100   HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1                 "         
   2:  2DFU-A 25.8  1.9  199   251   33   PROBABLE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE               "         
   3:  1NR9-A 25.7  1.9  197   211   35   PROTEIN YCGM;                                              "         
   4:  1GTT-A 22.3  2.3  188   421   27   4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL            "         
   5:  1QCO-A 18.9  2.4  204   416   20   FUMARYLACETOACETATE HYDROLASE;                             "         
   6:  1SV6-A 15.3  2.8  184   261   18   2-KETO-4-PENTENOATE HYDRATASE;                             "         
   7:  2EB4-A 15.2  2.8  183   261   19   2-OXO-HEPT-3-ENE-1,7-DIOATE HYDRATASE;                     "         
   8:  1HNF-A  3.2  2.8   75   179    8   CD2;                                                       "         
   9:  2PN5-A  3.1  4.9   84  1283    8   THIOESTER-CONTAINING PROTEIN I;                            "         
  10:  1I85-A  3.1  3.1   79   110   11   T LYMPHOCYTE ACTIVATION ANTIGEN CD86;                      "         
  11:  1I8L-A  3.0  3.2   76   199    5   T LYMPHOCYTE ACTIVATION ANTIGEN CD80;                      "         
  12:  2ICC-A  2.8  2.7   76   119   12   V-SET AND IMMUNOGLOBULIN DOMAIN-CONTAINING                 "         
  13:  2DRU-A  2.7  3.0   72   180   11   CHIMERA OF CD48 ANTIGEN AND T-CELL SURFACE                 "         
  14:  2IF7-A  2.6  4.9   79   188    1   SLAM FAMILY MEMBER 6;                                      "         
  15:  1GSM-A  2.6  3.1   69   206   10   MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1;                "         
  16:  2CH8-A  2.4  3.2   73   188   10   33 KDA EARLY PROTEIN;                                      "         
  17:  1JMA-A  2.4  4.0   97   259    8   HERPESVIRUS ENTRY MEDIATOR;                                "         
  18:  1CN4-A  2.3  3.9   88   217    2   PROTEIN (ERYTHROPOIETIN RECEPTOR);                         "         
  19:  1BD9-A  2.0  3.3   79   180    4   PHOSPHATIDYLETHANOLAMINE BINDING PROTEIN;                  "         
-

No 1: 1NKQA  MOLECULE: HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1                 

DSSP  LLHHHHLLLLEEEELLLLLLLLLLL..LLLEEEELHHHEELLLLL.LLLLLLLLLLLLLL
Query SYNYLKAARKIICIGRNYAAHIKEL..QPFFFLKPTSSIVTPLSS.PANSTFNGLNEDGT   57
ident |||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||
Sbjct SYNYLKAARKIICIGRNYAAHIKELnnQPFFFLKPTSSIVTPLSSsPANSTFNGLNEDGT   60
DSSP  LLHHHHHLLLEEEELLLLLLLHHHHhlLLLEEEELHHHEELLLLLlLLLLLLLLLLLLLL


DSSP  LLLLEEELLLLLEEELEEEEEEELLLLLLLLLLLLLHHHHHEEEEEEEELLEEHHHHHHH
Query NPGPIFIPRGVKVHHEIELALIVSKHLSNVTKXKPEEVYDSISGVALALDLTARNVQDEA  117
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct NPGPIFIPRGVKVHHEIELALIVSKHLSNVTKXKPEEVYDSISGVALALDLTARNVQDEA  120
DSSP  LLLLEEELLLLLEEELEEEEEEELLLLLLLLLLLHHHLHHHEEEEEEEELLEEHHHHHHH


DSSP  HHHLLLLHHHHHLLLLEELLLLEEHHHHHHHLLLLLLLEEEEEEELLEEEEEEEHHHLLL
Query KKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLXLH  177
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct KKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLXLH  180
DSSP  HHHLLLLHHHHHLLLLEELLLLEEHHHHHHHLLLLLLLEEEEEEELLEEEEEEEHHHLLL


DSSP  LHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEELLEEEEEEEEEEEELL
Query PLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDXNFECENRP  237
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct PLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDXNFECENRP  240
DSSP  LHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEELLEEEEEEEEEEEELL


DSSP  LLLLLLL
Query GPYEFRE  244
ident |||||||
Sbjct GPYEFRE  247
DSSP  LLLLLLL


No 2: 2DFUA  MOLECULE: PROBABLE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE               

DSSP  ..LLHH.....................................HHLLLLEEEELLLLLll
Query ..SYNY.....................................LKAARKIICIGRNYAah   21
ident                                                 || | ||||   
Sbjct mkILRFnegrwgvlegelvletdgpggnptgrrydlasvtllpPATPTKIVCVGRNYR..   58
DSSP  leEEEEllleeeeeelleeeeelllllleeeeeeehhhlleelLLLLLLEEEELLLLL..


DSSP  llllLLLEEEELHHHEELLLLLlllllllllllllllLLLEEELLLL.LEEELEEEEEEE
Query ikelQPFFFLKPTSSIVTPLSSpanstfnglnedgtnPGPIFIPRGV.KVHHEIELALIV   80
ident      |  |||       |                    |   |      | | |||  |
Sbjct .lpkEPGLFLKGPNALARPGNP.........rdpwgtAEPVPYPFFTeELHYEGELAVVV  108
DSSP  .lllLLLEEEELHHHEELLLLL.........llhhhhLLLEEELLLLlLEELLEEEEEEE


DSSP  LLLLLLlLLLLllHHHHHEEEEEEEELLEEHHHHHHHhhhlLLLHHHHHLLLLEELL.LL
Query SKHLSNvTKXKpeEVYDSISGVALALDLTARNVQDEAkkkgLPWTISKGFDTFXPIS.AI  139
ident                 |   |   | | ||| ||       | |   |  | | |     
Sbjct GDRMRH.VPPE..KALDHVLGYTVAVDITARDVQKKD....LQWVRAKSADKFLPLGpWL  161
DSSP  LLLLLL.LLHH..HHHHHEEEEEEEELLEEHHHHHHL....LLLHHHHLLLLLEEEEeEE


DSSP  EEHhhhhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEE
Query VSRekfssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHPLHKILQHISTXISLEPGDIIL  199
ident                   |   ||| ||| | |         ||  |||   ||| |  |
Sbjct ETD........lNPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVL  213
DSSP  ELL........lLLLLLEEEEEELLEEEEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEE


DSSP  LLLLLLLEEELLLLEEEEEEEElleeEEEEEEEEEELLLLLllll
Query TGTPAGVGELKPGDRVHCELLQnndnIVDXNFECENRPGPYefre  244
ident |||| ||| | ||||                              
Sbjct TGTPEGVGALRPGDRLEVAVEG....VGTLFTLIGPKEERP...w  251
DSSP  LLLLLLLLLLLLLLEEEEEELL....LEEEEEEEEEELLLL...l


No 3: 1NR9A  MOLECULE: PROTEIN YCGM;                                              

DSSP  .........LLHHhHLLLLEEEELLLLLllllllLLLEEEELHHHEELLLllllllllll
Query .........SYNYlKAARKIICIGRNYAahikelQPFFFLKPTSSIVTPLsspanstfng   51
ident                   |  | | |||       |  | ||                  
Sbjct hxyqhhnwqGALLdYPVSKVVCVGSNYA....peEPVLFIKPETALCDLR..........   46
DSSP  lllllllllLLLLlLLLLLEEEELLLLL....llLLLEEEELHHHEEELL..........


DSSP  llllllllLLEEELLL.LLEEELEEEEEEELLLLLLlLLLLllHHHHHEEEEEEEELLEE
Query lnedgtnpGPIFIPRG.VKVHHEIELALIVSKHLSNvTKXKpeEVYDSISGVALALDLTA  110
ident          |  ||     |||| |||      |          |   | |   ||||| 
Sbjct ........QPLAIPSDfGSVHHEVELAVLIGATLRQ.ATEE..HVRKAIAGYGVALDLTL   95
DSSP  ........LLLLLLLLlLLEEELEEEEEEELLLLLL.LLHH..HHHHHEEEEEEEELLLL


DSSP  HHHHHHHHHHLLLLHHHHHLLLLEELLLLEEHHHHHhhllLLLLlEEEEEEELLEEEEEE
Query RNVQDEAKKKGLPWTISKGFDTFXPISAIVSREKFSsyksNLQDiFRVKCSVNGQLRQDG  170
ident | ||   || | ||   | ||   | |       |       |       ||||  || |
Sbjct RDVQGKXKKAGQPWEKAKAFDNSCPLSGFIPAAEFT...gDPQN.TTLSLSVNGEQRQQG  151
DSSP  HHHHHHHHHHLLLLHHHHLLLLLEEELLLEEHHHLL...lLHHH.LEEEEEELLEEEEEE


DSSP  EHHHLLLLHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEelleeEEEEE
Query GTNLXLHPLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLqnndnIVDXN  230
ident  |  | |         |    |  ||  ||||| ||| |  ||                 
Sbjct TTADXIHKIVPLIAYXSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFD.....GHSLT  206
DSSP  EHHHLLLLHHHHHHHHLLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEL.....LEEEE


DSSP  EEEEElllllllll
Query FECENrpgpyefre  244
ident               
Sbjct TRVLG.........  211
DSSP  EELLL.........


No 4: 1GTTA  MOLECULE: 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL            

DSSP  llhhhhlLLLEEEELLLLLL..............lllllLLLEEEELHHHEELLLlllll
Query synylkaARKIICIGRNYAA..............hikelQPFFFLKPTSSIVTPLsspan   46
ident           |     |                          | ||             
Sbjct ......mKGTIFAVALNHRSqldawqeafqqspykappkTAVWFIKPRNTVIGCG.....   49
DSSP  ......lLLLEEEEELLLHHhhhhhllhhhlllllllllLLEEEEELHHHEELLL.....


DSSP  lllllllllllllLLEEELLLLLEEELEEEEEEELLLLLlLLLLllLHHHHHEEEEEEEE
Query stfnglnedgtnpGPIFIPRGVKVHHEIELALIVSKHLSnVTKXkpEEVYDSISGVALAL  106
ident               ||  | | ||      |||| |          |     | | ||| 
Sbjct .............EPIPFPQGEKVLSGATVALIVGKTAT.KVRE..EDAAEYIAGYALAN   93
DSSP  .............LLEEELLLLLEELLEEEEEEELLLLL.LLLH..HHHHHHEEEEEEEE


DSSP  LLEEHhhHHHHhhhLLLLHHHHHLLLLEELLLLEEHHhhhhhlllLLLLEEEEEEELLEE
Query DLTARnvQDEAkkkGLPWTISKGFDTFXPISAIVSREkfssyksnLQDIFRVKCSVNGQL  166
ident |               |    |  | | ||   |             |        ||  
Sbjct DVSLP..EESF...YRPAIKAKCRDGFCPIGETVALS........NVDNLTIYTEINGRP  140
DSSP  LLLLL..LLLL...LLLLHHHHLLLLLEELLLLLLLL........LLLLLEEEEEELLEE


DSSP  EEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEelleEE
Query RQDGGTNLXLHPLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLqnndNI  226
ident      |          |   |    | ||| || |||    |  |||||           
Sbjct ADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRVRVLAE....GF  196
DSSP  EEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEELLLLLLLLEELLLLEEEEEEL....LL


DSSP  EEEEEEEEELLL................................................
Query VDXNFECENRPG................................................  238
ident                                                             
Sbjct PPLENPVVDEREvttrksfptlphphgtlfalglnyadhpeeplvflkapntltgdnqts  256
DSSP  LLEEEEEEEHHHlllllllllllllllleeeelllllllllllleeeelhhheellleee


DSSP  ............................................................
Query ............................................................  238
ident                                                             
Sbjct vrpnnieymhyeaelvvvigkqarnvseadamdyvagytvcndyairdylenyyrpnlrv  316
DSSP  eelllllleelleeeeeeelllllllllllhhhheeeeeeeelleehhhllllllllhhh


DSSP  ............................................................
Query ............................................................  238
ident                                                             
Sbjct ksrdgltpmlstivpkeaipdphnltlrtfvngelrqqgttadlifsvpfliaylsefmt  376
DSSP  hllllleellllleehhhllllllleeeeeelleeeeeeehhhllllhhhhhhhhhllll


DSSP  .......................................llllll
Query .......................................pyefre  244
ident                                              
Sbjct lnpgdmiatgtpkglsdvvpgdevvvevegvgrlvnrivseetak  421
DSSP  llllleeelllllllllllllleeeeeellleeeeeeeeehhhhl


No 5: 1QCOA  MOLECULE: FUMARYLACETOACETATE HYDROLASE;                             

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct msfipvaedsdfpiqnlpygvfstqsnpkprigvaigdqildlsvikhlftgpalskhqh   60
DSSP  lllllllllllllllllleeeeellllllleeeeeelleeeellllhhhlllllllllhh


DSSP  .......................................................LLHHh
Query .......................................................SYNYl    5
ident                                                             
Sbjct vfdettlnnfmglgqaawkearaslqnllsasqarlrddkelrqraftsqasatmHLPA.  119
DSSP  hhhllllhhhhhllhhhhhhhhhhhhhhhlllllhhhhlhhhhhhheeehhhleeELLL.


DSSP  hLLLLEEEELlLLLL.................lllllLLLEEEELHHHEELLLlllllll
Query kAARKIICIGrNYAA.................hikelQPFFFLKPTSSIVTPLsspanst   48
ident                                       |       ||||          
Sbjct .TIGDYTDFY.SSRQhatnvgimfrgkenallpnwlhLPVGYHGRASSIVVSG.......  170
DSSP  .LLLLEEEEL.LLHHhhhhhhhhhllhhhllllllllLLLEEELLLLLEEELL.......


DSSP  lllllllllllLLEEEL...............LLLLEEELEEEEEEELLLLL...LLLLL
Query fnglnedgtnpGPIFIP...............RGVKVHHEIELALIVSKHLS...NVTKX   90
ident             ||  |                      | | |  |             
Sbjct ...........TPIRRPmgqmrpdnskppvygACRLLDMELEMAFFVGPGNRfgePIPIS  219
DSSP  ...........LLEELLeeeelllllllleeeELLLEELLEEEEEEELLLLLlllLLLHH


DSSP  lllHHHHHEEEEEEEELLEEHHHHHHHHhHLLLLHHHHHLllLEELLL.LEEHHHHHHH.
Query kpeEVYDSISGVALALDLTARNVQDEAKkKGLPWTISKGFdtFXPISA.IVSREKFSSY.  148
ident         | |  |  |  ||  |       |     | |     ||   |         
Sbjct ...KAHEHIFGMVLMNDWSARDIQQWEY.VPLGPFLGKSF..GTTISPwVVPMDALMPFv  273
DSSP  ...HHHHHEEEEEEEELLEEHHHHHHHL.LLLLLLHHHHL..LEEELLlLEEHHHHHHHe


DSSP  ................lLLLLLLEEEEEEEL......LEEEEEEEHHHLLLLHHHHHHHH
Query ................kSNLQDIFRVKCSVN......GQLRQDGGTNLXLHPLHKILQHI  186
ident                             |                           | | 
Sbjct vpnpkqdpkplpylchsQPYTFDINLSVSLKgegmsqAATICRSNFKHMYWTMLQQLTHH  333
DSSP  ellllllllllhhhlllLLLEELLEEEEEEEllllllLEEEEEEEHHHLLLLHHHHHHHH


DSSP  HLL.LLLLLLLEEELLLL.......LLLE....................EELLLLEEEEE
Query STX.ISLEPGDIILTGTP.......AGVG....................ELKPGDRVHCE  218
ident |     | |||    ||         |                       |  || |   
Sbjct SVNgCNLRPGDLLASGTIsgsdpesFGSMlelswkgtkaidvgqgqtrtFLLDGDEVIIT  393
DSSP  HLLlLLLLLLLEEELLLLllllhhhLLLHhhhllllllleellllleelLLLLLLEEEEE


DSSP  EEEL....LEEEEEEEEEEEELLlllllll
Query LLQN....NDNIVDXNFECENRPgpyefre  244
ident                               
Sbjct GHCQgdgyRVGFGQCAGKVLPAL.......  416
DSSP  EEEEllllEEELLLEEEEEELLL.......


No 6: 1SV6A  MOLECULE: 2-KETO-4-PENTENOATE HYDRATASE;                             

DSSP  ...............................................llhhhhllLLEEE
Query ...............................................synylkaaRKIIC   13
ident                                                             
Sbjct mtkhtleqlaadlrraaeqgeaiaplrdligidnaeaayaiqhinvqhdvaqgrrVVGRK   60
DSSP  llllhhhhhhhhhhhhhhhlllllllhhhhllllhhhhhhhhhhhhhhhhlllllEEEEE


DSSP  ELLLLL...llllllLLLEEEELHHHEELLLllllllllllllllllllLLEEELLlLLE
Query IGRNYA...ahikelQPFFFLKPTSSIVTPLsspanstfnglnedgtnpGPIFIPRgVKV   70
ident  |             || |                                |   |    
Sbjct VGLTHPkvqqqlgvdQPDFGTLFADMCYGDN..................EIIPFSRvLQP  102
DSSP  EELLLHhhhhlllllLLEEEEEEHHHEEELL..................EEELLLLlLLL


DSSP  EELEEEEEEELLLLLLLlLLLLLHHHHHEEEEEEEELLEEHHH.hHHHH.hhlLLLHhHH
Query HHEIELALIVSKHLSNVtKXKPEEVYDSISGVALALDLTARNV.qDEAK.kkgLPWTiSK  128
ident   | | ||     |         | |  |  |  ||                        
Sbjct RIEAEIALVLNRDLPAT.DITFDELYNAIEWVLPALEVVGSRIrdWSIQfvdtVADN.AS  160
DSSP  EEEEEEEEEELLLLLLL.LLLHHHHHLLEEEEEEEEEEELLLLllLLLLhhhhHHLH.HH


DSSP  HLllLEELL.LLEEHHHHhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLL....HHHHH
Query GFdtFXPIS.AIVSREKFssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHP....LHKIL  183
ident        |                       |   |      |     |           
Sbjct CG..VYVIGgPAQRPAGL......DLKNCAMKMTRNNEEVSSGRGSECLGHplnaAVWLA  212
DSSP  EE..EEEELlLLLLLLLL......LLLLLEEEEEELLEEEEEEEHHHLLLLhhhhHHHHH


DSSP  HHHHLL.LLLLLLLEEELLLLLLLEEELLLLEEEEEEEElleeEEEEEEEEEElllllll
Query QHISTX.ISLEPGDIILTGTPAGVGELKPGDRVHCELLQnndnIVDXNFECENrpgpyef  242
ident          |  |||||||          |||           |                
Sbjct RKMASLgEPLRTGDIILTGALGPMVAVNAGDRFEAHIEG....IGSVAATFSS.......  261
DSSP  HHHHHLlLLLLLLLEEEEEELLLLEELLLLLEEEEEELL....LEEEEEEELL.......


DSSP  ll
Query re  244
ident   
Sbjct ..  261
DSSP  ..


No 7: 2EB4A  MOLECULE: 2-OXO-HEPT-3-ENE-1,7-DIOATE HYDRATASE;                     

DSSP  ................................................llhhhhllLLEE
Query ................................................synylkaaRKII   12
ident                                                          |  
Sbjct mfdkhthtliaqrldqaekqreqiraisldypeitiedayavqrewvrlkiaegrtLKGH   60
DSSP  lllhhhhhhhhhhhhhhhhhllllllhhhhlllllhhhhhhhhhhhhhhhhhllllEEEE


DSSP  EELLLL...lllllllLLLEEEELHHHEELLLllllllllllllllllllLLEEELLLLL
Query CIGRNY...aahikelQPFFFLKPTSSIVTPLsspanstfnglnedgtnpGPIFIPRGVK   69
ident  ||              |                                  |   |   
Sbjct KIGLTSkamqassqisEPDYGALLDDMFFHDG..................SDIPTDRFIV  102
DSSP  EEELHHhhhlllllllLLEEEEEEHHHEELLL..................EEELHHHLLL


DSSP  EEELEEEEEEELLLLLLLLLLlLLHHHHHEEEEEEEELLEEhhHHHH.hhHHLLL...LH
Query VHHEIELALIVSKHLSNVTKXkPEEVYDSISGVALALDLTArnVQDE.akKKGLP...WT  125
ident    | |||    | |          ||     |  || |            |        
Sbjct PRIEVELAFVLAKPLRGPNCT.LFDVYNATDYVIPALELID..ARCHnipRKVFDtisDN  159
DSSP  LEEEEEEEEEELLLLLLLLLL.HHHHHHHEEEEEEEEEEEL..LLLLlllLHHHHhhhLH


DSSP  HHHHlllLEELL.LLEEHHHHhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLLHHHHHH
Query ISKGfdtFXPIS.AIVSREKFssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHPLHKILQ  184
ident                                       ||     |     |        
Sbjct AANA...GVILGgRPIKPDEL......DLRWISALMYRNGVIEETGVAAGVLNHPANGVA  210
DSSP  HHEE...EEEELlLLLLLLLL......LHHHLEEEEEELLEEEEEEEHHHLLLLLLHHHH


DSSP  HHHLLL.....LLLLLLEEELLLLLLLEEELLLLEEEEEEEelleEEEEEEEEEEellll
Query HISTXI.....SLEPGDIILTGTPAGVGELKPGDRVHCELLqnndNIVDXNFECEnrpgp  239
ident             || | ||| |          ||  |        |              
Sbjct WLANKLapydvQLEAGQIILGGSFTRPVPARKGDTFHVDYG....NMGSISCRFV.....  261
DSSP  HHHHHHhhhllLLLLLLEEELLLLLLLEELLLLLEEEEELH....HHLEEEEEEL.....


DSSP  lllll
Query yefre  244
ident      
Sbjct .....  261
DSSP  .....


No 8: 1HNFA  MOLECULE: CD2;                                                       

DSSP  llhhhhlllleeeelllllllllllllleeeelhhheelllllllllllllllllllllL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnpG   60
ident                                                             
Sbjct ........................................................tnaL    4
DSSP  ........................................................lllE


DSSP  LEEELLLLLeeeleeeeeeelllllllllllllhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident       |                                                     
Sbjct ETWGALGQD...................................................   13
DSSP  EEEEELLLL...................................................


DSSP  llllhhhhhlllLEELL.LLEEhhhhhhhllllllLEEEEEEEL..LEEEEEEEHHHLll
Query glpwtiskgfdtFXPIS.AIVSrekfssyksnlqdIFRVKCSVN..GQLRQDGGTNLXlh  177
ident                                    |   |                    
Sbjct ............INLDIpSFQM..........sddIDDIKWEKTsdKKKIAQFRKEKE..   49
DSSP  ............EEELLlLLLL..........lllEEEEEEEEHhhLLEEEEELHHHL..


DSSP  lhhhhhhhhhllllllllleeelllLLLLE................eeLLLLEEEEEEEE
Query plhkilqhistxislepgdiiltgtPAGVG................elKPGDRVHCELLQ  221
ident                                                    |        
Sbjct .........................TFKEKdtyklfkngtlkikhlktDDQDIYKVSIYD   84
DSSP  .........................EEELLlleeellllleeellllhHHLEEEEEEEEE


DSSP  L.LEEEEEEEEEEEELLLL.........................................
Query N.NDNIVDXNFECENRPGP.........................................  239
ident     |     |                                                 
Sbjct TkGKNVLEKIFDLKIQERVskpkiswtcinttltcevmngtdpelnlyqdgkhlklsqrv  144
DSSP  LlLLEEEEEEEEEEEELLLllleeeeelllleeeeellllllleeeeeellleeeeelll


DSSP  ..............................lllll
Query ..............................yefre  244
ident                                    
Sbjct ithkwttslsakfkctagnkvskessvepvscpek  179
DSSP  eeeelllleeeeeeeeeelllleeeeeeeeeelll


No 9: 2PN5A  MOLECULE: THIOESTER-CONTAINING PROTEIN I;                            

DSSP  ...........................................llhhhhlllleeeelll
Query ...........................................synylkaarkiicigrn   17
ident                                                             
Sbjct llvvgpkfiranqeytlvisnfnsqlskvdlllklelsvlnvtkmvdvrrnmnrminfnm   60
DSSP  leeeeeleelllleeeeeeeelllllleeeeeeeelllllleeeeeeeelleeeeeeeel


DSSP  llllllllllleeeelhhheelllllllllllllllllllllLLEEEllllLEEELEEEE
Query yaahikelqpffflkptssivtplsspanstfnglnedgtnpGPIFIprgvKVHHEIELA   77
ident                                                             
Sbjct pedltagnykitidgqrgfsfhkeaelvylsksisgliqvdkPVFKP....GDTVNFRVI  116
DSSP  lllllllleeeeeeeellllleeeeeeeelllleeeeeeellLEELL....LLEEEEEEE


DSSP  EeelllllllllllllhhhHHEEeeeeeelleehhhhhhhhhhllllhhhhhlllleell
Query LivskhlsnvtkxkpeevyDSISgvalaldltarnvqdeakkkglpwtiskgfdtfxpis  137
ident                                                             
Sbjct V................ldTELK.....................................  123
DSSP  E................eeLLLL.....................................


DSSP  lleehhhhhhhLLLLLLlEEEEEEEL.LEEEEEEEHhhllllhhhhhhhhhlllllllll
Query aivsrekfssyKSNLQDiFRVKCSVN.GQLRQDGGTnlxlhplhkilqhistxislepgd  196
ident                     |              |                        
Sbjct ..........pPARVKS.VYVTIRDPqRNVIRKWST....................akly  152
DSSP  ..........lLLLLLE.EEEEEELLlLLEEEEEEE....................eell


DSSP  eeELLLlllLEEE..LLLLEEEEEEEELLEEEEEEEEEEEELLLL...............
Query iiLTGTpagVGEL..KPGDRVHCELLQNNDNIVDXNFECENRPGP...............  239
ident                                 |   ||                      
Sbjct agVFES..dLQIAptPMLGVWNISVEVEGEELVSKTFEVKEYVLStfdvqvmpsviplee  210
DSSP  llEEEE..eEELLllLLLEEEEEEEEELLEEEEEEEEEELLLLLLleeeeeeelllllhh


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct hqavnltieanyhfgkpvqgvakvelyldddklklkkeltvygkgqvelrfdnfamdadq  270
DSSP  hleeeeeeeeeelllllleeeeeeeeeelllleeeeeeeeeeleeeeeeellllllllle


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct qdvpvkvsfveqytnrtvvkqsqitvyryayrvelikespqfrpglpfkcalqfthhdgt  330
DSSP  eeeeeeeeeeellllleeeeeeeeeeelllleeeeeelllllllllleeeeeeeelllll


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct pakgisgkvevsdvrfettttsdndgliklelqpsegteqlsihfnavdgfffyedvnkv  390
DSSP  llllleeeeeehhhleeeeeellllleeeeeellllllleeeeeeellllleeeeeeell


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct etvtdayiklelkspikrnklmrfmvtctermtffvyyvmskgniidagfmrpnkqpkyl  450
DSSP  llllllleeeeelllllllleeeeeeeeeeeelleeeeeelllleeeeeeelllleeeee


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct lqlnatekmiprakiliatvagrtvvydfadlafqelrnnfdlsideqeikpgrqielsm  510
DSSP  eeeellhhhlleeeeeeeeeelleeeeeeeeeelhhhlllleeeellllllllleeeeee


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct sgrpgayvglaaydkalllfnknhdlfwedigqvfdgfhenefdifhslglfartlddil  570
DSSP  ellllleeeeeeeehhhhhhllllllhhhhhhhhhlllllllllhhhhhleeeeelllle


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct fdsqeswlwknvsigrsgsrklievvpdtttswyltgfsidpvyglgiikkpiqfttvqp  630
DSSP  ellllllllleeellllleeeeeeellllleeeeeeeeeeellleeeelllleeeeelll


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct fyivenlpysikrgeavvlqftlfnnlgaeyiadvtlynvanqtefvgrpntdlsytksv  690
DSSP  eeeeeellleeellleeeeeeeeeellllleeeeeeeelhhhleeelllllllleeeeee


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct svppkvgvpisflikarklgemavrvkasimlghetdalekvirvmpeslvqprmdtrff  750
DSSP  eellllleeeeeeeeellleeeeeeeeeelllllleeeeeeeeeeellllllleeeeeee


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct cfddhknqtfpinldinkkadsgstkiefrlnpnllttviknldhllgvptgcgeqnmvk  810
DSSP  eeeeeeeeeeeeelllllllllllleeeeeeellllhhhhhllllllllllllllhhhhh


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct fvpnilvldylhaigskeqhlidkatnllrqgyqnqmryrqtdgsfglwettngsvflta  870
DSSP  lhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhhhllllllllllllllllhhhhh


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct fvgtsmqtavkyisdidaamvekaldwlaskqhfsgrfdkagaeyhkemqgglrngvalt  930
DSSP  hhhhhhhhhllllllllhhhhhhhhhhhhhllllllllllllllllhhhhllllllhhhh


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct syvlmallendiakakhaeviqkgmtylsnqfgsinnaydlsiatyammlnghtmkeeal  990
DSSP  hhhhhhhhllhhhhhhlhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhhllllhhhhh


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct nklidmsfidadknerfwnttnpiettayallsfvmaekytdgipvmnwlvnqryvtgsf 1050
DSSP  hhhhhlleeelllleeelllllhhhhhhhhhhhhhhlllhhhhhhhhhhhhlllllllll


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct pstqdtfvglkaltkmaekispsrndytvqlkykksakyfkinseqidvenfvdipedtk 1110
DSSP  llhhhhhhhhhhhhhhhhhhllllleeeeeeeelleeeeeeelllllllllleellllll


DSSP  ............................................................
Query ............................................................  239
ident                                                             
Sbjct kleinvggigfgllevvyqfnlnlvnfenrfqldlekqntgsdyelrlkvcasyipqltd 1170
DSSP  eeeeeeeeeeeeeeeeeeellllllleeeleeeeeeeelllllleeeeeeeeeellllll


DSSP  ..................................lLLLL.....................
Query ..................................yEFRE.....................  244
ident                                    | |                      
Sbjct rrsnmalievtlpsgyvvdrnpiseqtkvnpiqktEIRYggtsvvlyydnmgserncftl 1230
DSSP  llllleeeeeelllleeeeeeeeellllllllleeEEELllleeeeeellllllleeeee


DSSP  .....................................................
Query .....................................................  244
ident                                                      
Sbjct tayrrfkvalkrpayvvvydyyntnlnaikvyevdkqnlceicdeedcpaecg 1283
DSSP  eeeellleelllleeeeeeelleeeeeeeeeellllllhhhhlllllllllll


No 10: 1I85A  MOLECULE: T LYMPHOCYTE ACTIVATION ANTIGEN CD86;                      

DSSP  llhhhhlllleeeelllllllllllllleeeelhhheellllllllllllllllllllLL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnPG   60
ident                                                             
Sbjct ..........................................................ML    2
DSSP  ..........................................................LL


DSSP  LEEELLLLleeeleeeeeeelllllllllllllhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident  |                                                          
Sbjct KIQAYFNE....................................................   10
DSSP  EEEEELLL....................................................


DSSP  llllhhhhhlllLEEL.LLLEEHHhhhhhlllLLLLEEEEEEEL.LEEEEEEEHHHllll
Query glpwtiskgfdtFXPI.SAIVSREkfssyksnLQDIFRVKCSVN.GQLRQDGGTNLxlhp  178
ident                      |                |                     
Sbjct ...........tADLPcQFANSQN.......qSLSELVVFWQDQeNLVLNEVYLGK....   48
DSSP  ...........lEEELlLLLLLLL.......lLLLLLEEEEELLlLLEEEEELLLL....


DSSP  hhhhhhhhhllllllllleeelLLLLLLE.....................eeLLLLEEEE
Query lhkilqhistxislepgdiiltGTPAGVG.....................elKPGDRVHC  217
ident                            |                        |      |
Sbjct ......................EKFDSVHskymgrtsfdsdswtlrlhnlqiKDKGLYQC   86
DSSP  ......................LLLLLLLlllllleeelllllleeelllllLLLLEEEE


DSSP  EEEEL....LEEEEEEEEEEEELLlllllll
Query ELLQN....NDNIVDXNFECENRPgpyefre  244
ident             |   | |            
Sbjct IIHHKkptgMIRIHQMNSELSVLA.......  110
DSSP  EEELLllllLLEEEEEEEEEEEEL.......


No 11: 1I8LA  MOLECULE: T LYMPHOCYTE ACTIVATION ANTIGEN CD80;                      

DSSP  llhhhhlllleeeelllllllllllllleeeelhhheelllllllllllllllllllllL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnpG   60
ident                                                             
Sbjct ..........................................................vI    2
DSSP  ..........................................................lE


DSSP  LEEELLLLLeeeleeeeeeelllllllllllllhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident                                                             
Sbjct HVTKEVKEV...................................................   11
DSSP  EEEEELLLL...................................................


DSSP  llllhhhhhlllLEEL.LLLEehhhhhhhllLLLLLEEEEEEELLEEEEEEEHHHllllh
Query glpwtiskgfdtFXPI.SAIVsrekfssyksNLQDIFRVKCSVNGQLRQDGGTNLxlhpl  179
ident                     |                |                      
Sbjct ............ATLScGHNV........svEELAQTRIYWQKEKKMVLTMMSGD.....   46
DSSP  ............EEELlLLLL........lhHHHLLEEEEEEELLEEEEEEELLE.....


DSSP  hhhhhhhhllllllllleeelllLLLL.....................eeeLLLLEEEEE
Query hkilqhistxislepgdiiltgtPAGV.....................gelKPGDRVHCE  218
ident                                                           | 
Sbjct .......................MNIWpeyknrtifditnnlsivilalrpSDEGTYECV   83
DSSP  .......................EEELlllllleeeellllleeeellllhHHLEEEEEE


DSSP  EEEL....LEEEEEEEEEEEELLLL...................................
Query LLQN....NDNIVDXNFECENRPGP...................................  239
ident  |                                                          
Sbjct VLKYekdaFKREHLAEVTLSVKADFptpsisdfeiptsnirriicstsggfpephlswle  143
DSSP  EEEEelleEEEEEEEEEEEEEELLLllleeeeeellllleeeeeeeeeeellleeeeeel


DSSP  ...................................................lllll
Query ...................................................yefre  244
ident                                                         
Sbjct ngeelnainttvsqdpetelyavsskldfnmttnhsfmclikyghlrvnqtfnwnt  199
DSSP  llllllllleeeeelllllleeeeeeeeeellllleeeeeeeelleeelleeelll


No 12: 2ICCA  MOLECULE: V-SET AND IMMUNOGLOBULIN DOMAIN-CONTAINING                 

DSSP  llhhhhlllleeeelllllllllllllleeeelhhheeLLLLllllllllllllllllll
Query synylkaarkiicigrnyaahikelqpffflkptssivTPLSspanstfnglnedgtnpg   60
ident                                                             
Sbjct .................................grpilEVPE..................    9
DSSP  .................................lllllLLLL..................


DSSP  LEEELLLLLeeeleeeeeeelllllllllllllhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident     |                                                       
Sbjct SVTGPWKGD...................................................   18
DSSP  EEEEELLLL...................................................


DSSP  llllhhhhhlllLEELLLLEEHHHhhhhlllllllEEEEEEEL....LEEEEEEeHHHLl
Query glpwtiskgfdtFXPISAIVSREKfssyksnlqdiFRVKCSVN....GQLRQDGgTNLXl  176
ident               |                      ||  |                  
Sbjct ...........vNLPCTYDPLQGY.........tqVLVKWLVQrgsdPVTIFLR.DSSG.   56
DSSP  ...........eEELLLLLLLLLL.........eeEEEEEEELllllLEEEEEE.ELLE.


DSSP  llhhhhhhhhhllllllllleeelllLLLLE........................eeLLL
Query hplhkilqhistxislepgdiiltgtPAGVG........................elKPG  212
ident                                                             
Sbjct ..........................DHIQQakyqgrlhvshkvpgdvslqlstlemDDR   90
DSSP  ..........................EEELLhhhllleeellllllllleeellllhHHL


DSSP  LEEEEEEEEL....lEEEEEEEEEEEELLlllllll
Query DRVHCELLQN....nDNIVDXNFECENRPgpyefre  244
ident     ||             |   |            
Sbjct SHYTCEVTWQtpdgnQVVRDKITELRVQK.......  119
DSSP  EEEEEEEEEElllllEEEEEEEEEEEEEL.......


No 13: 2DRUA  MOLECULE: CHIMERA OF CD48 ANTIGEN AND T-CELL SURFACE                 

DSSP  llhhhhlllleeeelllllllllllllleeeelhhheellllllllllllllllllllLL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnPG   60
ident                                                             
Sbjct .....................................................fqdqsVP    7
DSSP  .....................................................lllllLL


DSSP  LEEELLLLLEeeleeeeeeelllllllllllllhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVKVhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident       |  |                                                  
Sbjct NVNAITGSNV..................................................   17
DSSP  EEEEELLLLE..................................................


DSSP  llllhhhhhlllLEELLLLEehhhhhhhlllllllEEEEEEEL.LEEEEEEEHHHLlllh
Query glpwtiskgfdtFXPISAIVsrekfssyksnlqdiFRVKCSVN.GQLRQDGGTNLXlhpl  179
ident                |                    |        |       |      
Sbjct ............TLTILKHP...........lasyQRLTWLHTtNQKILEYFPNGK....   50
DSSP  ............EELLLLLL...........llllLEEEEELLlLLEEEEELLLLL....


DSSP  hhhhhhhhllllllllleeelllLLLL.....................eeeLLLLEEEEE
Query hkilqhistxislepgdiiltgtPAGV.....................gelKPGDRVHCE  218
ident                                                             
Sbjct .......................KTVFesvfkdrvdldktngalriynvskEDRGDYYMR   87
DSSP  .......................EEELllllllleeelllllleeellllhHHLEEEEEE


DSSP  EEEllEEEEEEEEEEEELLLL.......................................
Query LLQnnDNIVDXNFECENRPGP.......................................  239
ident  |             |                                            
Sbjct MLH..ETEDQWKITMEVYEMVskpmiywecsnatltcevlegtdvelklyqgkehlrslr  145
DSSP  EEL..LLEEEEEEEEEEELLLllleeeeehhhleeeeellllllleeeeeelleeeeeel


DSSP  ..............................lllll
Query ..............................yefre  244
ident                                    
Sbjct qktmsyqwtnlrapfkckavnrvsqesemevvncp  180
DSSP  lleeeeellllllleeeeeeelleeeeeeelllll


No 14: 2IF7A  MOLECULE: SLAM FAMILY MEMBER 6;                                      

DSSP  llhhhhlllleeeelllllllllllllleeeelhhheelllllllllllllllllllllL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnpG   60
ident                                                             
Sbjct ........................................................ltpL    4
DSSP  ........................................................lllE


DSSP  LEEELlllleeeleeeeeeelllllllllllllhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPrgvkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident                                                             
Sbjct MVNGI.......................................................    9
DSSP  EEEEE.......................................................


DSSP  llllhhhhhlLLLEEL.LLLEEhhhhhhhlllllllEEEEEEELLEEEEEEEHhhLLLLH
Query glpwtiskgfDTFXPI.SAIVSrekfssyksnlqdiFRVKCSVNGQLRQDGGTnlXLHPL  179
ident                                            |                
Sbjct ........lgESVTLPlEFPAG...........ekvNFITWLFNETSLAFIVP..HETKS   48
DSSP  ........llLLEEELlLLLLL...........lllLEEEEEELLEEEEEEEL..LLLLL


DSSP  hhhhhhhhllllllllleeelLLLLLLE....................eeLLLLEEEEEE
Query hkilqhistxislepgdiiltGTPAGVG....................elKPGDRVHCEL  219
ident                                                             
Sbjct .....................PEIHVTNpkqgkrlnftqsyslqlsnlkmEDTGSYRAQI   87
DSSP  .....................LEEEELLhhhhlleeellllleeellllhHHLEEEEEEE


DSSP  EELLEEeEEEEEEEEELLLL.......................LLLL.............
Query LQNNDNiVDXNFECENRPGP.......................YEFR.............  243
ident                                                             
Sbjct STKTSA.KLSSYTLRILRQLrniqvtnhsqnmtcelhltcsveDADDnvsfrwealgntl  146
DSSP  ELLLLE.EEEEEEEEEELLLeeeeeeelllllleeeeeeeeeeLLLLlleeeeeelleee


DSSP  .........................................l
Query .........................................e  244
ident                                           
Sbjct ssqpnltvswdprisseqdytciaenavsnlsfsvsaqklce  188
DSSP  ellleeeeeelllllllleeeeeeeelleeeeeeeehhhhll


No 15: 1GSMA  MOLECULE: MUCOSAL ADDRESSIN CELL ADHESION MOLECULE-1;                

DSSP  llhhhhlllleeeelllllllllllllleeeelhhheELLLlllllllllllllllllll
Query synylkaarkiicigrnyaahikelqpffflkptssiVTPLsspanstfnglnedgtnpg   60
ident                                                             
Sbjct ..............................vkplqvePPEP...................   11
DSSP  ..............................llleeeeLLLL...................


DSSP  LEEELLLLLEEELEEEEeeelllllllllllllhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVKVHHEIELAlivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident       |        ||                                           
Sbjct VVAVALGASRQLTCRLA...........................................   28
DSSP  EEEEELLLLEEEEEEEL...........................................


DSSP  llllhhhhhlllleelllleehhhhhhhlllLLLLEEEEEEELLE..eEEEEEHhhllll
Query glpwtiskgfdtfxpisaivsrekfssyksnLQDIFRVKCSVNGQ..lRQDGGTnlxlhp  178
ident                                      |               |      
Sbjct ..............................cADRGASVQWRGLDTslgAVQSDT......   52
DSSP  ..............................lLLLLLEEEEELLLLlllLEEEEL......


DSSP  hhhhhhhhhllllllllleeellllllleeelLLLEEEEEEEELLEEeEEEEEEEEELLL
Query lhkilqhistxislepgdiiltgtpagvgelkPGDRVHCELLQNNDNiVDXNFECENRPG  238
ident                                       |                     
Sbjct ...................grsvltvrnaslsAAGTRVCVGSCGGRT.FQHTVQLLVYAF   92
DSSP  ...................leeeeeellllhhHLEEEEEEEEELLEE.EEEEEEEEEELL


DSSP  L...........................................................
Query P...........................................................  239
ident |                                                           
Sbjct Pnqltvspaalvpgdpevactahkvtpvdpnalsfsllvggqelegaqalgpevqeeeee  152
DSSP  Lleeeeellllllllleeeeeeeeellllllleeeeeeelleelllleellleeeellll


DSSP  .................................................lllll
Query .................................................yefre  244
ident                                                       
Sbjct pqgdedvlfrvterwrlpplgtpvppalycqatmrlpglelshrqaipvliegr  206
DSSP  lllllllleeeeeeeelllllllllleeeeeeeeeelleeeeeeeeeellllll


No 16: 2CH8A  MOLECULE: 33 KDA EARLY PROTEIN;                                      

DSSP  llhhhhlllleeeelllllllllllllleeeelhhheellllllllllllllllllllll
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnpg   60
ident                                                             
Sbjct ............................................................    0
DSSP  ............................................................


DSSP  lEEELLLLLEeeleeeeeeelllllllllllllhhhhheeeeeeeelleehhhhhhhhhh
Query pIFIPRGVKVhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident       |  |                                                  
Sbjct .VTAFLGERV..................................................    9
DSSP  .LEEELLLLE..................................................


DSSP  llllhhhhhlllLEELLLLEehhhhhhhlllLLLLEEEEEEEL.....LEEEEEEEHHHl
Query glpwtiskgfdtFXPISAIVsrekfssyksnLQDIFRVKCSVN.....GQLRQDGGTNLx  175
ident                                |     |            |         
Sbjct ............TLTSYWRR.........vsLGPEIEVSWFKLgpgeeQVLIGRMHHDV.   47
DSSP  ............EEEEELLL.........llLHHHLEEEEEEElllllEEEEEEEELLE.


DSSP  lllhhhhhhhhhllllllllleeelllLLLL......................eeeLLLL
Query lhplhkilqhistxislepgdiiltgtPAGV......................gelKPGD  213
ident                                                             
Sbjct ...........................IFIEwpfrgffdihrsantfflvvtaaniSHDG   80
DSSP  ...........................EEELhhhllleeeeeelleeeeeellllhHHLE


DSSP  EEEEEEEELLEEeEEEEEEEEELLLL..................................
Query RVHCELLQNNDNiVDXNFECENRPGP..................................  239
ident    |         |                                              
Sbjct NYLCRMKLGETE.VTKQEHLSVVKPLtlsvhsersqfpdfsvltvtctvnafphphvqwl  139
DSSP  EEEEEEEELLEE.EEEEEEEEEEEEEeeeeeeeelllllllleeeeeeeeeelleeeeee


DSSP  ............................................lllll
Query ............................................yefre  244
ident                                                  
Sbjct mpggvmkekdgslsvavdlslpkpwhlpvtcvgkndkeeahgvyvsgyl  188
DSSP  llllleellllleeeeeeeeellllllleeeeeeelleeeeeeeeelll


No 17: 1JMAA  MOLECULE: HERPESVIRUS ENTRY MEDIATOR;                                

DSSP  llhhhhlllleeeelllllllLLLL.....................LLLEeeelhhheel
Query synylkaarkiicigrnyaahIKEL.....................QPFFflkptssivt   39
ident                                               |             
Sbjct ....................kYALAdaslkmadpnrfrgkdlpvldQLTD...ppgvrrv   37
DSSP  ....................lLLLLlhhhhllllllllllllllllEELL...lllleee


DSSP  llllllllllllllllllllLLEEEL.LLLLEeeleeeeeeelllllllllllllhhhhh
Query plsspanstfnglnedgtnpGPIFIP.RGVKVhheielalivskhlsnvtkxkpeevyds   98
ident                                |                            
Sbjct yhiqaglpdpfqppslpitvYYAVLErACRSV............................   69
DSSP  lllllllllllllllllleeEEEEELlLLLEE............................


DSSP  eeeeeeeelleehhhhhhhhhhllllhhhhhlllLEELLLLE..EHHHHHH.HLLLLLlL
Query isgvalaldltarnvqdeakkkglpwtiskgfdtFXPISAIV..SREKFSS.YKSNLQdI  155
ident                                                  |          
Sbjct ..................................LLNAPSEApqIVRGASEdVRKQPY.N   94
DSSP  ..................................EELLLLLHhhHHHLLLHhHHLLLE.E


DSSP  EEEEEEEL....LEEEEEEEHHhllllhhhhhhhhhllllllllleeelllLLLLEE...
Query FRVKCSVN....GQLRQDGGTNlxlhplhkilqhistxislepgdiiltgtPAGVGE...  208
ident                                                    |        
Sbjct LTIAWFRMggncAIPITVMEYT.............ecsynkslgacpirtqPRWNYYdsf  141
DSSP  EEEEEEEEelleEEEEEEEEEE.............eelllllllllleeelLEELLLlll


DSSP  ................elLLLEEEEEEEELLEEeEEEEEEEEELLLLLLLL.........
Query ................lkPGDRVHCELLQNNDNiVDXNFECENRPGPYEFR.........  243
ident                              |        |  | |                
Sbjct savsednlgflmhapafeTAGTYLRLVKINDWT.EITQFILEHRAKGSCKYalplripps  200
DSSP  eeelllllleeeelllhhHLEEEEEEEEELLEE.EEEEEEEEELLLLLLLLlllllllhh


DSSP  ..........................................................l
Query ..........................................................e  244
ident                                                            
Sbjct aclspqayqqgvtvdsigmlprfipenqrtvavyslkiagwhgpkapytstllppelse  259
DSSP  hlllhhhhhlllllllllleelllhhhhhhhhhhhhhlllllllllleelllllhhhhl


No 18: 1CN4A  MOLECULE: PROTEIN (ERYTHROPOIETIN RECEPTOR);                         

DSSP  llhhhhlllleeeellllllllllllllEEEE...LHHHEelllllllllllllllllll
Query synylkaarkiicigrnyaahikelqpfFFLK...PTSSIvtplsspanstfnglnedgt   57
ident                                |                            
Sbjct ............................PDPKfesKAALL.................aar   15
DSSP  ............................LLHHhhhHHHHH.................hll


DSSP  lllleeelllLLEEELEEeEEEElllllllllllllhhhhheeeeeeeelleehhhhhhh
Query npgpifiprgVKVHHEIElALIVskhlsnvtkxkpeevydsisgvalaldltarnvqdea  117
ident                                                             
Sbjct gpeellcfteRLEDLVCF.WEEA.....................................   37
DSSP  llllleeellLLLLLEEE.EEEL.....................................


DSSP  hhhllllhhhhhlllleelllleehhhhhhhLLLL.LLLEEEEEEELLEEEEEEEHhhll
Query kkkglpwtiskgfdtfxpisaivsrekfssyKSNL.QDIFRVKCSVNGQLRQDGGTnlxl  176
ident                                                             
Sbjct ..............................aSAGVgPGQYSFSYQLEDEPWKLCRL....   63
DSSP  ..............................lLLLLlLLLEEEEEEELLLLLEEELL....


DSSP  llhhhhhhhhhlllllLLLLeEELLL.llllEEELlLLEEEEEEEEL.LEEEEEEEEEEE
Query hplhkilqhistxislEPGDiILTGT.pagvGELKpGDRVHCELLQN.NDNIVDXNFECE  234
ident                   |                                         
Sbjct ...........hqaptARGA.VRFWCslptaDTSS.FVPLELRVTAAsGAPRYHRVIHIN  110
DSSP  ...........eeeelLLLL.EEEEEellhhHLLL.LLLEEEEEEELlLLLLLEEEELLL


DSSP  ...............................eLLLLLLL.....................
Query ...............................nRPGPYEF.....................  242
ident                                                             
Sbjct evvlldapvglvarladesghvvlrwlpppetPMTSHIRyevdvsagqgagsvqrveile  170
DSSP  lleelllleeeelllllllllleeeeelllllLLHHHEEeeeeeellllllleeeeeell


DSSP  .............................................ll
Query .............................................re  244
ident                                                
Sbjct grtecvlsnlrgrtrytfavrarmaepsfggfwsewsepvslltpsd  217
DSSP  llleeelllllllleeeeeeeeeelllllleellllllleeeellll


No 19: 1BD9A  MOLECULE: PHOSPHATIDYLETHANOLAMINE BINDING PROTEIN;                  

DSSP  llhhhhlllleeeelllllllllllllleeeelhHHEELLLllllllllllllllllllL
Query synylkaarkiicigrnyaahikelqpffflkptSSIVTPLsspanstfnglnedgtnpG   60
ident                                                             
Sbjct .........lskwsgplslqevdeqpqhplhvtyAGAAVDE................lgK   35
DSSP  .........lhhhhllllhhhlllllleeleeeeLLEEELL................llE


DSSP  LEEELllllEEELeeeeeeelllllllllllllhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPrgvkVHHEielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident                                                             
Sbjct VLTPT..qvKNRP...............................................   46
DSSP  ELLLH..hhLLLL...............................................


DSSP  llllhhhhhlllleelLLLEEhhhhhhhlllLLLLEEEEEEEL...........LEEEEE
Query glpwtiskgfdtfxpiSAIVSrekfssyksnLQDIFRVKCSVN...........GQLRQD  169
ident                                                             
Sbjct ..............tsISWDG........ldSGKLYTLVLTDPdapsrkdpkyrEWHHFL   84
DSSP  ..............leEELLL........llLLLEEEEEEEELlllllllllllLEEEEE


DSSP  EEHhhllllhhhhhhhhhllllllllleeellLLLLLEEELL.....LLEEEEEEEEL..
Query GGTnlxlhplhkilqhistxislepgdiiltgTPAGVGELKP.....GDRVHCELLQN..  222
ident                                          |       |          
Sbjct VVN...................mkgndissgtVLSDYVGSGPpkgtgLHRYVWLVYEQdr  125
DSSP  EEE...................eelllhhhleEEELLLLLLLlllllLEEEEEEEEELll


DSSP  ...............................LEEEEEEEEEEEELL..lllllll
Query ...............................NDNIVDXNFECENRP..gpyefre  244
ident                                           |            
Sbjct plkcdepilsnrsgdhrgkfkvasfrkkyelRAPVAGTCYQAEWDDyvpklyeql  180
DSSP  lllllllllllllllllllllhhhhhhhlllLLLLEEEEEEELLLLlhhhhhhhl