DaliLite: Structural Neighbours

Query: 1NKQB MOLECULE: HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Summary

Notation:
Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry
  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1NKQ-A 44.6  0.3  244   247  100   HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1                 "         
   2:  2DFU-A 25.9  1.9  199   251   34   PROBABLE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE               "         
   3:  1NR9-A 25.8  2.0  198   211   35   PROTEIN YCGM;                                              "         
   4:  1GTT-A 22.4  2.8  192   421   27   4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL            "         
   5:  1QCO-A 19.0  2.5  206   416   19   FUMARYLACETOACETATE HYDROLASE;                             "         
   6:  2EB4-A 15.6  3.0  188   261   18   2-OXO-HEPT-3-ENE-1,7-DIOATE HYDRATASE;                     "         
   7:  1SV6-A 15.6  2.7  183   261   18   2-KETO-4-PENTENOATE HYDRATASE;                             "         
   8:  1HNF-A  3.1  2.9   76   179    8   CD2;                                                       "         
   9:  2PN5-A  3.0  3.9   81  1283    6   THIOESTER-CONTAINING PROTEIN I;                            "         
  10:  1I85-A  3.0  3.1   79   110   13   T LYMPHOCYTE ACTIVATION ANTIGEN CD86;                      "         
  11:  1I8L-A  2.9  3.2   76   199    5   T LYMPHOCYTE ACTIVATION ANTIGEN CD80;                      "         
  12:  2J12-B  2.6  2.9   74   120    9   FIBER PROTEIN;                                             "         
  13:  2IF7-A  2.6  4.9   79   188    1   SLAM FAMILY MEMBER 6;                                      "         
  14:  1CN4-A  2.6  3.5   83   217    4   PROTEIN (ERYTHROPOIETIN RECEPTOR);                         "         
  15:  2DRU-A  2.5  3.0   72   180    8   CHIMERA OF CD48 ANTIGEN AND T-CELL SURFACE                 "         
  16:  2GJ7-E  2.4  3.2   78   171    9   IG GAMMA-1 CHAIN C REGION;                                 "         
  17:  1JMA-A  2.4  3.9   96   259    7   HERPESVIRUS ENTRY MEDIATOR;                                "         
  18:  1BD9-A  2.0  3.4   82   180    4   PHOSPHATIDYLETHANOLAMINE BINDING PROTEIN;                  "         
-

No 1: 1NKQA  MOLECULE: HYPOTHETICAL 28.8 KDA PROTEIN IN PSD1-SKO1                 

DSSP  LLLHHHHLLLEEEELLLLLLLHHHL..LLLEEELLHHHEELLLLL.LLLLLLLLLLLLLL
Query SYNYLKAARKIICIGRNYAAHIKEL..QPFFFLKPTSSIVTPLSS.PANSTFNGLNEDGT   57
ident |||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||
Sbjct SYNYLKAARKIICIGRNYAAHIKELnnQPFFFLKPTSSIVTPLSSsPANSTFNGLNEDGT   60
DSSP  LLHHHHHLLLEEEELLLLLLLHHHHhlLLLEEEELHHHEELLLLLlLLLLLLLLLLLLLL


DSSP  LLLLEEELLLLLEEELEEEEEEELLLLLLLLLLLHHHHHHHEEEEEEEELLEEHHHHHHH
Query NPGPIFIPRGVKVHHEIELALIVSKHLSNVTKXKPEEVYDSISGVALALDLTARNVQDEA  117
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct NPGPIFIPRGVKVHHEIELALIVSKHLSNVTKXKPEEVYDSISGVALALDLTARNVQDEA  120
DSSP  LLLLEEELLLLLEEELEEEEEEELLLLLLLLLLLHHHLHHHEEEEEEEELLEEHHHHHHH


DSSP  HHHLLLLHHHHHLLLLEELLLLEEHHHHHHHLLLLLLLEEEEEEELLEEEEEEEHHHLLL
Query KKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLXLH  177
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct KKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLXLH  180
DSSP  HHHLLLLHHHHHLLLLEELLLLEEHHHHHHHLLLLLLLEEEEEEELLEEEEEEEHHHLLL


DSSP  LHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEELLEEEEEEEEEEEELL
Query PLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDXNFECENRP  237
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct PLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDXNFECENRP  240
DSSP  LHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEELLEEEEEEEEEEEELL


DSSP  LLLLLLL
Query GPYEFRE  244
ident |||||||
Sbjct GPYEFRE  247
DSSP  LLLLLLL


No 2: 2DFUA  MOLECULE: PROBABLE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE               

DSSP  ..LLLH.....................................HHHLLLEEEELLLLLll
Query ..SYNY.....................................LKAARKIICIGRNYAah   21
ident                                                 || | ||||   
Sbjct mkILRFnegrwgvlegelvletdgpggnptgrrydlasvtllpPATPTKIVCVGRNYR..   58
DSSP  leEEEEllleeeeeelleeeeelllllleeeeeeehhhlleelLLLLLLEEEELLLLL..


DSSP  hhhlLLLEEELLHHHEELLLLLlllllllllllllllLLLEEELLLL.LEEELEEEEEEE
Query ikelQPFFFLKPTSSIVTPLSSpanstfnglnedgtnPGPIFIPRGV.KVHHEIELALIV   80
ident      |  |||       |                    |   |      | | |||  |
Sbjct .lpkEPGLFLKGPNALARPGNP.........rdpwgtAEPVPYPFFTeELHYEGELAVVV  108
DSSP  .lllLLLEEEELHHHEELLLLL.........llhhhhLLLEEELLLLlLEELLEEEEEEE


DSSP  LLLLLLLlLLLHhhHHHHEEEEEEEELLEEHHHHHHHhhhlLLLHHHHHLLLLEELL.LL
Query SKHLSNVtKXKPeeVYDSISGVALALDLTARNVQDEAkkkgLPWTISKGFDTFXPIS.AI  139
ident       |         |   |   | | ||| ||       | |   |  | | |     
Sbjct GDRMRHV.PPEK..ALDHVLGYTVAVDITARDVQKKD....LQWVRAKSADKFLPLGpWL  161
DSSP  LLLLLLL.LHHH..HHHHEEEEEEEELLEEHHHHHHL....LLLHHHHLLLLLEEEEeEE


DSSP  EEHhhhhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEE
Query VSRekfssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHPLHKILQHISTXISLEPGDIIL  199
ident                   |   ||| ||| | |         ||  |||   ||| |  |
Sbjct ETD........lNPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVL  213
DSSP  ELL........lLLLLLEEEEEELLEEEEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEE


DSSP  LLLLLLLEEELLLLEEEEEEEElleeEEEEEEEEEELLLLLllll
Query TGTPAGVGELKPGDRVHCELLQnndnIVDXNFECENRPGPYefre  244
ident |||| ||| | ||||                              
Sbjct TGTPEGVGALRPGDRLEVAVEG....VGTLFTLIGPKEERP...w  251
DSSP  LLLLLLLLLLLLLLEEEEEELL....LEEEEEEEEEELLLL...l


No 3: 1NR9A  MOLECULE: PROTEIN YCGM;                                              

DSSP  .........LLLHHHHLLLEEEELLLLLllhhhlLLLEEELLHHHEELLLllllllllll
Query .........SYNYLKAARKIICIGRNYAahikelQPFFFLKPTSSIVTPLsspanstfng   51
ident                   |  | | |||       |  | ||                  
Sbjct hxyqhhnwqGALLDYPVSKVVCVGSNYA....peEPVLFIKPETALCDLR..........   46
DSSP  lllllllllLLLLLLLLLLEEEELLLLL....llLLLEEEELHHHEEELL..........


DSSP  llllllllLLEEELLL.LLEEELEEEEEEELLLLLLLlLLLHhhHHHHEEEEEEEELLEE
Query lnedgtnpGPIFIPRG.VKVHHEIELALIVSKHLSNVtKXKPeeVYDSISGVALALDLTA  110
ident          |  ||     |||| |||      |          |   | |   ||||| 
Sbjct ........QPLAIPSDfGSVHHEVELAVLIGATLRQA.TEEH..VRKAIAGYGVALDLTL   95
DSSP  ........LLLLLLLLlLLEEELEEEEEEELLLLLLL.LHHH..HHHHEEEEEEEELLLL


DSSP  HHHHHHHHHHLLLLHHHHHLLLLEELLLLEEHHHHHhhllLLLLlEEEEEEELLEEEEEE
Query RNVQDEAKKKGLPWTISKGFDTFXPISAIVSREKFSsyksNLQDiFRVKCSVNGQLRQDG  170
ident | ||   || | ||   | ||   | |       |       |       ||||  || |
Sbjct RDVQGKXKKAGQPWEKAKAFDNSCPLSGFIPAAEFT...gDPQN.TTLSLSVNGEQRQQG  151
DSSP  HHHHHHHHHHLLLLHHHHLLLLLEEELLLEEHHHLL...lLHHH.LEEEEEELLEEEEEE


DSSP  EHHHLLLLHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEelleeEEEEE
Query GTNLXLHPLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLqnndnIVDXN  230
ident  |  | |         |    |  ||  ||||| ||| |  ||                 
Sbjct TTADXIHKIVPLIAYXSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFD.....GHSLT  206
DSSP  EHHHLLLLHHHHHHHHLLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEL.....LEEEE


DSSP  EEEEElllllllll
Query FECENrpgpyefre  244
ident               
Sbjct TRVLG.........  211
DSSP  EELLL.........


No 4: 1GTTA  MOLECULE: 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL            

DSSP  lllhhhhLLLEEEELLLLLL..LHHH............lLLLEEELLHHHEELLLlllll
Query synylkaARKIICIGRNYAA..HIKE............lQPFFFLKPTSSIVTPLsspan   46
ident           |     |                          | ||             
Sbjct ......mKGTIFAVALNHRSqlDAWQeafqqspykappkTAVWFIKPRNTVIGCG.....   49
DSSP  ......lLLLEEEEELLLHHhhHHHLlhhhlllllllllLLEEEEELHHHEELLL.....


DSSP  lllllllllllllLLEEELLLLLEEELEEEEEEELLLLLlLLLLlhHHHHHHEEEEEEEE
Query stfnglnedgtnpGPIFIPRGVKVHHEIELALIVSKHLSnVTKXkpEEVYDSISGVALAL  106
ident               ||  | | ||      |||| |          |     | | ||| 
Sbjct .............EPIPFPQGEKVLSGATVALIVGKTAT.KVRE..EDAAEYIAGYALAN   93
DSSP  .............LLEEELLLLLEELLEEEEEEELLLLL.LLLH..HHHHHHEEEEEEEE


DSSP  LLEEHhhHHHHhhhLLLLHHHHHLLLLEELLLLEEHHhhhhhlllLLLLEEEEEEELLEE
Query DLTARnvQDEAkkkGLPWTISKGFDTFXPISAIVSREkfssyksnLQDIFRVKCSVNGQL  166
ident |               |    |  | | ||   |             |        ||  
Sbjct DVSLP..EESF...YRPAIKAKCRDGFCPIGETVALS........NVDNLTIYTEINGRP  140
DSSP  LLLLL..LLLL...LLLLHHHHLLLLLEELLLLLLLL........LLLLLEEEEEELLEE


DSSP  EEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEELLLLLLLEEELLLLEEEEEEEelleEE
Query RQDGGTNLXLHPLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLqnndNI  226
ident      |          |   |    | ||| || |||    |  |||||           
Sbjct ADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRVRVLAE....GF  196
DSSP  EEEEEHHHLLLLHHHHHHHHHLLLLLLLLLEEELLLLLLLLEELLLLEEEEEEL....LL


DSSP  EEEEEEEEELLL................................................
Query VDXNFECENRPG................................................  238
ident                                                             
Sbjct PPLENPVVDEREvttrksfptlphphgtlfalglnyadhpeeplvflkapntltgdnqts  256
DSSP  LLEEEEEEEHHHlllllllllllllllleeeelllllllllllleeeelhhheellleee


DSSP  ............................................................
Query ............................................................  238
ident                                                             
Sbjct vrpnnieymhyeaelvvvigkqarnvseadamdyvagytvcndyairdylenyyrpnlrv  316
DSSP  eelllllleelleeeeeeelllllllllllhhhheeeeeeeelleehhhllllllllhhh


DSSP  ............................................................
Query ............................................................  238
ident                                                             
Sbjct ksrdgltpmlstivpkeaipdphnltlrtfvngelrqqgttadlifsvpfliaylsefmt  376
DSSP  hllllleellllleehhhllllllleeeeeelleeeeeeehhhllllhhhhhhhhhllll


DSSP  .......................................llllll
Query .......................................pyefre  244
ident                                              
Sbjct lnpgdmiatgtpkglsdvvpgdevvvevegvgrlvnrivseetak  421
DSSP  llllleeelllllllllllllleeeeeellleeeeeeeeehhhhl


No 5: 1QCOA  MOLECULE: FUMARYLACETOACETATE HYDROLASE;                             

DSSP  ..................LLLH......................................
Query ..................SYNY......................................    4
ident                                                             
Sbjct msfipvaedsdfpiqnlpYGVFstqsnpkprigvaigdqildlsvikhlftgpalskhqh   60
DSSP  llllllllllllllllllEEEEellllllleeeeeelleeeellllhhhlllllllllhh


DSSP  .........................................................HHH
Query .........................................................LKA    7
ident                                                             
Sbjct vfdettlnnfmglgqaawkearaslqnllsasqarlrddkelrqraftsqasatmhlPAT  120
DSSP  hhhllllhhhhhllhhhhhhhhhhhhhhhlllllhhhhlhhhhhhheeehhhleeelLLL


DSSP  LLLEEEELlLLLL.................lhhhlLLLEEELLHHHEELLLlllllllll
Query ARKIICIGrNYAA.................hikelQPFFFLKPTSSIVTPLsspanstfn   50
ident                                     |       ||||            
Sbjct IGDYTDFY.SSRQhatnvgimfrgkenallpnwlhLPVGYHGRASSIVVSG.........  170
DSSP  LLLEEEEL.LLHHhhhhhhhhhllhhhllllllllLLLEEELLLLLEEELL.........


DSSP  lllllllllLLEEELL...............LLLEEELEEEEEEELLLLL..LLLLLLhh
Query glnedgtnpGPIFIPR...............GVKVHHEIELALIVSKHLS..NVTKXKpe   93
ident           ||  |                      | | |  |               
Sbjct .........TPIRRPMgqmrpdnskppvygaCRLLDMELEMAFFVGPGNRfgEPIPIS..  219
DSSP  .........LLEELLEeeelllllllleeeeLLLEELLEEEEEEELLLLLllLLLLHH..


DSSP  HHHHHEEEEEEEELLEEHHHHHHHHhHLLLLHHHHHLllLEELL.LLEEHHHHHHH....
Query EVYDSISGVALALDLTARNVQDEAKkKGLPWTISKGFdtFXPIS.AIVSREKFSSY....  148
ident      | |  |  |  ||  |       |     | |     ||   |            
Sbjct KAHEHIFGMVLMNDWSARDIQQWEY.VPLGPFLGKSF..GTTISpWVVPMDALMPFvvpn  276
DSSP  HHHHHEEEEEEEELLEEHHHHHHHL.LLLLLLHHHHL..LEEELlLLEEHHHHHHHeell


DSSP  .............lLLLLLLEEEEEEEL......LEEEEEEEHHHLLLLHHHHHHHHHLL
Query .............kSNLQDIFRVKCSVN......GQLRQDGGTNLXLHPLHKILQHISTX  189
ident                          |                           | | |  
Sbjct pkqdpkplpylchsQPYTFDINLSVSLKgegmsqAATICRSNFKHMYWTMLQQLTHHSVN  336
DSSP  llllllllhhhlllLLLEELLEEEEEEEllllllLEEEEEEEHHHLLLLHHHHHHHHHLL


DSSP  .LLLLLLLEEELLLL.......LLLE....................EELLLLEEEEEEEE
Query .ISLEPGDIILTGTP.......AGVG....................ELKPGDRVHCELLQ  221
ident    | |||    ||         |                       |  || |      
Sbjct gCNLRPGDLLASGTIsgsdpesFGSMlelswkgtkaidvgqgqtrtFLLDGDEVIITGHC  396
DSSP  lLLLLLLLEEELLLLllllhhhLLLHhhhllllllleellllleelLLLLLLEEEEEEEE


DSSP  L...lEEEEEE.EEEEEELLlllllll
Query N...nDNIVDX.NFECENRPgpyefre  244
ident                            
Sbjct QgdgyRVGFGQcAGKVLPAL.......  416
DSSP  EllllEEELLLeEEEEELLL.......


No 6: 2EB4A  MOLECULE: 2-OXO-HEPT-3-ENE-1,7-DIOATE HYDRATASE;                     

DSSP  ................................................lllhhhhlLLEE
Query ................................................synylkaaRKII   12
ident                                                          |  
Sbjct mfdkhthtliaqrldqaekqreqiraisldypeitiedayavqrewvrlkiaegrtLKGH   60
DSSP  lllhhhhhhhhhhhhhhhhhllllllhhhhlllllhhhhhhhhhhhhhhhhhllllEEEE


DSSP  EELLLLL.lLHHH..lLLLEEELLHHHEELLLllllllllllllllllllLLEEELLLLL
Query CIGRNYA.aHIKE..lQPFFFLKPTSSIVTPLsspanstfnglnedgtnpGPIFIPRGVK   69
ident  ||              |                                  |   |   
Sbjct KIGLTSKamQASSqisEPDYGALLDDMFFHDG..................SDIPTDRFIV  102
DSSP  EEELHHHhhLLLLlllLLEEEEEEHHHEELLL..................EEELHHHLLL


DSSP  EEELEEEEEEELLLLLLLLLLlHHHHHHHEEEEEEEELLEEhhHHHH.hhHHLLL...LH
Query VHHEIELALIVSKHLSNVTKXkPEEVYDSISGVALALDLTArnVQDE.akKKGLP...WT  125
ident    | |||    | |          ||     |  || |            |        
Sbjct PRIEVELAFVLAKPLRGPNCT.LFDVYNATDYVIPALELID..ARCHnipRKVFDtisDN  159
DSSP  LEEEEEEEEEELLLLLLLLLL.HHHHHHHEEEEEEEEEEEL..LLLLlllLHHHHhhhLH


DSSP  HHHHlllLEELL.LLEEHHHHhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLLHHHHHH
Query ISKGfdtFXPIS.AIVSREKFssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHPLHKILQ  184
ident                                       ||     |     |        
Sbjct AANA...GVILGgRPIKPDEL......DLRWISALMYRNGVIEETGVAAGVLNHPANGVA  210
DSSP  HHEE...EEEELlLLLLLLLL......LHHHLEEEEEELLEEEEEEEHHHLLLLLLHHHH


DSSP  HHHLLL.....LLLLLLEEELLLLLLLEEELLLLEEEEEEEelleEEEEEEEEEEellll
Query HISTXI.....SLEPGDIILTGTPAGVGELKPGDRVHCELLqnndNIVDXNFECEnrpgp  239
ident             || | ||| |          ||  |        |              
Sbjct WLANKLapydvQLEAGQIILGGSFTRPVPARKGDTFHVDYG....NMGSISCRFV.....  261
DSSP  HHHHHHhhhllLLLLLLEEELLLLLLLEELLLLLEEEEELH....HHLEEEEEEL.....


DSSP  lllll
Query yefre  244
ident      
Sbjct .....  261
DSSP  .....


No 7: 1SV6A  MOLECULE: 2-KETO-4-PENTENOATE HYDRATASE;                             

DSSP  ...............................................lllhhhhlLLEEE
Query ...............................................synylkaaRKIIC   13
ident                                                             
Sbjct mtkhtleqlaadlrraaeqgeaiaplrdligidnaeaayaiqhinvqhdvaqgrrVVGRK   60
DSSP  llllhhhhhhhhhhhhhhhlllllllhhhhllllhhhhhhhhhhhhhhhhlllllEEEEE


DSSP  ELLLLLL...lhhhlLLLEEELLHHHEELLLllllllllllllllllllLLEEELllLLE
Query IGRNYAA...hikelQPFFFLKPTSSIVTPLsspanstfnglnedgtnpGPIFIPrgVKV   70
ident  |             || |                                |        
Sbjct VGLTHPKvqqqlgvdQPDFGTLFADMCYGDN..................EIIPFSrvLQP  102
DSSP  EELLLHHhhhlllllLLEEEEEEHHHEEELL..................EEELLLllLLL


DSSP  EELEEEEEEELLLLLLLlLLLHHHHHHHEEEEEEEELLEEHHH.hHHHH..hhlLLLHHH
Query HHEIELALIVSKHLSNVtKXKPEEVYDSISGVALALDLTARNV.qDEAK..kkgLPWTIS  127
ident   | | ||     |         | |  |  |  ||                        
Sbjct RIEAEIALVLNRDLPAT.DITFDELYNAIEWVLPALEVVGSRIrdWSIQfvdtvADNASC  161
DSSP  EEEEEEEEEELLLLLLL.LLLHHHHHLLEEEEEEEEEEELLLLllLLLLhhhhhHLHHHE


DSSP  HhlllLEELL.LLEEHHHHhhhlllLLLLEEEEEEELLEEEEEEEHHHLLLL....HHHH
Query KgfdtFXPIS.AIVSREKFssyksnLQDIFRVKCSVNGQLRQDGGTNLXLHP....LHKI  182
ident         |                       |   |      |     |          
Sbjct G....VYVIGgPAQRPAGL......DLKNCAMKMTRNNEEVSSGRGSECLGHplnaAVWL  211
DSSP  E....EEEELlLLLLLLLL......LLLLLEEEEEELLEEEEEEEHHHLLLLhhhhHHHH


DSSP  HHHHHLL.LLLLLLLEEELLLLLLLEEELLLLEEEEEEEElleeEEEEEEEEEEllllll
Query LQHISTX.ISLEPGDIILTGTPAGVGELKPGDRVHCELLQnndnIVDXNFECENrpgpye  241
ident           |  |||||||          |||           |               
Sbjct ARKMASLgEPLRTGDIILTGALGPMVAVNAGDRFEAHIEG....IGSVAATFSS......  261
DSSP  HHHHHHLlLLLLLLLEEEEEELLLLEELLLLLEEEEEELL....LEEEEEEELL......


DSSP  lll
Query fre  244
ident    
Sbjct ...  261
DSSP  ...


No 8: 1HNFA  MOLECULE: CD2;                                                       

DSSP  lllhhhhllleeeelllllllhhhlllleeellhhheelllllllllllllllllllllL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnpG   60
ident                                                             
Sbjct ........................................................tnaL    4
DSSP  ........................................................lllE


DSSP  LEEELLLLLeeeleeeeeeelllllllllllhhhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident       |                                                     
Sbjct ETWGALGQD...................................................   13
DSSP  EEEEELLLL...................................................


DSSP  llllhhhhhlllLEELL.LLEEHhhhhhhllllllLEEEEEEEL..LEEEEEEEHHHLll
Query glpwtiskgfdtFXPIS.AIVSRekfssyksnlqdIFRVKCSVN..GQLRQDGGTNLXlh  177
ident                                    |   |                    
Sbjct ............INLDIpSFQMS..........ddIDDIKWEKTsdKKKIAQFRKEKE..   49
DSSP  ............EEELLlLLLLL..........llEEEEEEEEHhhLLEEEEELHHHL..


DSSP  lhhhhhhhhhllllllllleeelllLLLLE................eeLLLLEEEEEEEE
Query plhkilqhistxislepgdiiltgtPAGVG................elKPGDRVHCELLQ  221
ident                                                    |        
Sbjct .........................TFKEKdtyklfkngtlkikhlktDDQDIYKVSIYD   84
DSSP  .........................EEELLlleeellllleeellllhHHLEEEEEEEEE


DSSP  L.LEEEEEEEEEEEELLLL.........................................
Query N.NDNIVDXNFECENRPGP.........................................  239
ident     |     |                                                 
Sbjct TkGKNVLEKIFDLKIQERVskpkiswtcinttltcevmngtdpelnlyqdgkhlklsqrv  144
DSSP  LlLLEEEEEEEEEEEELLLllleeeeelllleeeeellllllleeeeeellleeeeelll


DSSP  ..............................lllll
Query ..............................yefre  244
ident                                    
Sbjct ithkwttslsakfkctagnkvskessvepvscpek  179
DSSP  eeeelllleeeeeeeeeelllleeeeeeeeeelll


No 9: 2PN5A  MOLECULE: THIOESTER-CONTAINING PROTEIN I;                            

DSSP  ...........................................lllhhhhllleeeelll
Query ...........................................synylkaarkiicigrn   17
ident                                                             
Sbjct llvvgpkfiranqeytlvisnfnsqlskvdlllklelsvlnvtkmvdvrrnmnrminfnm   60
DSSP  leeeeeleelllleeeeeeeelllllleeeeeeeelllllleeeeeeeelleeeeeeeel


DSSP  llllhhhlllleeellhhheelllllllllllllllllllllLLEEEllllLEEELEEEE
Query yaahikelqpffflkptssivtplsspanstfnglnedgtnpGPIFIprgvKVHHEIELA   77
ident                                                             
Sbjct pedltagnykitidgqrgfsfhkeaelvylsksisgliqvdkPVFKP....GDTVNFRVI  116
DSSP  lllllllleeeeeeeellllleeeeeeeelllleeeeeeellLEELL....LLEEEEEEE


DSSP  EeelllllllllllhhhhhHHEEEeeeeelleehhhhhhhhhhllllhhhhhlllleell
Query LivskhlsnvtkxkpeevyDSISGvalaldltarnvqdeakkkglpwtiskgfdtfxpis  137
ident                                                             
Sbjct V................ldTELKP....................................  124
DSSP  E................eeLLLLL....................................


DSSP  lleehhhhhhhlLLLLLlEEEEEEEL.LEEEEEEEHhhllllhhhhhhhhhlllllllll
Query aivsrekfssykSNLQDiFRVKCSVN.GQLRQDGGTnlxlhplhkilqhistxislepgd  196
ident                     |              |                        
Sbjct ...........pARVKS.VYVTIRDPqRNVIRKWST....................akly  152
DSSP  ...........lLLLLE.EEEEEELLlLLEEEEEEE....................eell


DSSP  eeELLLlllLEEE..llLLEEEEEEEELLEEEEEEEEEEEELLL................
Query iiLTGTpagVGEL..kpGDRVHCELLQNNDNIVDXNFECENRPG................  238
ident                                 |   ||                      
Sbjct agVFES..dLQIAptpmLGVWNISVEVEGEELVSKTFEVKEYVLstfdvqvmpsviplee  210
DSSP  llEEEE..eEELLllllLEEEEEEEEELLEEEEEEEEEELLLLLlleeeeeeelllllhh


DSSP  ...........LLLL.............................................
Query ...........PYEF.............................................  242
ident                                                             
Sbjct hqavnltieanYHFGkpvqgvakvelyldddklklkkeltvygkgqvelrfdnfamdadq  270
DSSP  hleeeeeeeeeELLLllleeeeeeeeeelllleeeeeeeeeeleeeeeeellllllllle


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct qdvpvkvsfveqytnrtvvkqsqitvyryayrvelikespqfrpglpfkcalqfthhdgt  330
DSSP  eeeeeeeeeeellllleeeeeeeeeeelllleeeeeelllllllllleeeeeeeelllll


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct pakgisgkvevsdvrfettttsdndgliklelqpsegteqlsihfnavdgfffyedvnkv  390
DSSP  llllleeeeeehhhleeeeeellllleeeeeellllllleeeeeeellllleeeeeeell


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct etvtdayiklelkspikrnklmrfmvtctermtffvyyvmskgniidagfmrpnkqpkyl  450
DSSP  llllllleeeeelllllllleeeeeeeeeeeelleeeeeelllleeeeeeelllleeeee


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct lqlnatekmiprakiliatvagrtvvydfadlafqelrnnfdlsideqeikpgrqielsm  510
DSSP  eeeellhhhlleeeeeeeeeelleeeeeeeeeelhhhlllleeeellllllllleeeeee


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct sgrpgayvglaaydkalllfnknhdlfwedigqvfdgfhenefdifhslglfartlddil  570
DSSP  ellllleeeeeeeehhhhhhllllllhhhhhhhhhlllllllllhhhhhleeeeelllle


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct fdsqeswlwknvsigrsgsrklievvpdtttswyltgfsidpvyglgiikkpiqfttvqp  630
DSSP  ellllllllleeellllleeeeeeellllleeeeeeeeeeellleeeelllleeeeelll


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct fyivenlpysikrgeavvlqftlfnnlgaeyiadvtlynvanqtefvgrpntdlsytksv  690
DSSP  eeeeeellleeellleeeeeeeeeellllleeeeeeeelhhhleeelllllllleeeeee


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct svppkvgvpisflikarklgemavrvkasimlghetdalekvirvmpeslvqprmdtrff  750
DSSP  eellllleeeeeeeeellleeeeeeeeeelllllleeeeeeeeeeellllllleeeeeee


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct cfddhknqtfpinldinkkadsgstkiefrlnpnllttviknldhllgvptgcgeqnmvk  810
DSSP  eeeeeeeeeeeeelllllllllllleeeeeeellllhhhhhllllllllllllllhhhhh


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct fvpnilvldylhaigskeqhlidkatnllrqgyqnqmryrqtdgsfglwettngsvflta  870
DSSP  lhhhhhhhhhhhhlllllhhhhhhhhhhhhhhhhhhhhhllllllllllllllllhhhhh


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct fvgtsmqtavkyisdidaamvekaldwlaskqhfsgrfdkagaeyhkemqgglrngvalt  930
DSSP  hhhhhhhhhllllllllhhhhhhhhhhhhhllllllllllllllllhhhhllllllhhhh


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct syvlmallendiakakhaeviqkgmtylsnqfgsinnaydlsiatyammlnghtmkeeal  990
DSSP  hhhhhhhhllhhhhhhlhhhhhhhhhhhhhhhhhlllhhhhhhhhhhhhhhllllhhhhh


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct nklidmsfidadknerfwnttnpiettayallsfvmaekytdgipvmnwlvnqryvtgsf 1050
DSSP  hhhhhlleeelllleeelllllhhhhhhhhhhhhhhlllhhhhhhhhhhhhlllllllll


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct pstqdtfvglkaltkmaekispsrndytvqlkykksakyfkinseqidvenfvdipedtk 1110
DSSP  llhhhhhhhhhhhhhhhhhhllllleeeeeeeelleeeeeeelllllllllleellllll


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct kleinvggigfgllevvyqfnlnlvnfenrfqldlekqntgsdyelrlkvcasyipqltd 1170
DSSP  eeeeeeeeeeeeeeeeeeellllllleeeleeeeeeeelllllleeeeeeeeeellllll


DSSP  ............................................................
Query ............................................................  242
ident                                                             
Sbjct rrsnmalievtlpsgyvvdrnpiseqtkvnpiqkteiryggtsvvlyydnmgserncftl 1230
DSSP  llllleeeeeelllleeeeeeeeellllllllleeeeelllleeeeeellllllleeeee


DSSP  ...................................................ll
Query ...................................................re  244
ident                                                      
Sbjct tayrrfkvalkrpayvvvydyyntnlnaikvyevdkqnlceicdeedcpaecg 1283
DSSP  eeeellleelllleeeeeeelleeeeeeeeeellllllhhhhlllllllllll


No 10: 1I85A  MOLECULE: T LYMPHOCYTE ACTIVATION ANTIGEN CD86;                      

DSSP  lllhhhhllleeeelllllllhhhlllleeellhhheellllllllllllllllllllLL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnPG   60
ident                                                             
Sbjct ..........................................................ML    2
DSSP  ..........................................................LL


DSSP  LEEELLLLleeeleeeeeeelllllllllllhhhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident  |                                                          
Sbjct KIQAYFNE....................................................   10
DSSP  EEEEELLL....................................................


DSSP  llllhhhhhlllLEEL.LLLEEHHhhhhhlllLLLLEEEEEEELLEEE.EEEEHHHllll
Query glpwtiskgfdtFXPI.SAIVSREkfssyksnLQDIFRVKCSVNGQLR.QDGGTNLxlhp  178
ident                      |                |       |             
Sbjct ...........tADLPcQFANSQN.......qSLSELVVFWQDQENLVlNEVYLGK....   48
DSSP  ...........lEEELlLLLLLLL.......lLLLLLEEEEELLLLLEeEEELLLL....


DSSP  hhhhhhhhhllllllllleeelLLLLLLE.....................eeLLLLEEEE
Query lhkilqhistxislepgdiiltGTPAGVG.....................elKPGDRVHC  217
ident                            |                        |      |
Sbjct ......................EKFDSVHskymgrtsfdsdswtlrlhnlqiKDKGLYQC   86
DSSP  ......................LLLLLLLlllllleeelllllleeelllllLLLLEEEE


DSSP  EEEEL....LEEEEEEEEEEEELLlllllll
Query ELLQN....NDNIVDXNFECENRPgpyefre  244
ident             |   | |            
Sbjct IIHHKkptgMIRIHQMNSELSVLA.......  110
DSSP  EEELLllllLLEEEEEEEEEEEEL.......


No 11: 1I8LA  MOLECULE: T LYMPHOCYTE ACTIVATION ANTIGEN CD80;                      

DSSP  lllhhhhllleeeelllllllhhhlllleeellhhheelllllllllllllllllllllL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnpG   60
ident                                                             
Sbjct ..........................................................vI    2
DSSP  ..........................................................lE


DSSP  LEEELLLLLeeeleeeeeeelllllllllllhhhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident                                                             
Sbjct HVTKEVKEV...................................................   11
DSSP  EEEEELLLL...................................................


DSSP  llllhhhhhlllLEEL.LLLEehhhhhhhllLLLLLEEEEEEELLEEEEEEEHHHllllh
Query glpwtiskgfdtFXPI.SAIVsrekfssyksNLQDIFRVKCSVNGQLRQDGGTNLxlhpl  179
ident                     |                |                      
Sbjct ............ATLScGHNV........svEELAQTRIYWQKEKKMVLTMMSGD.....   46
DSSP  ............EEELlLLLL........lhHHHLLEEEEEEELLEEEEEEELLE.....


DSSP  hhhhhhhhllllllllleeelllLLLL.....................eeeLLLLEEEEE
Query hkilqhistxislepgdiiltgtPAGV.....................gelKPGDRVHCE  218
ident                                                           | 
Sbjct .......................MNIWpeyknrtifditnnlsivilalrpSDEGTYECV   83
DSSP  .......................EEELlllllleeeellllleeeellllhHHLEEEEEE


DSSP  EEEL....LEEEEEEEEEEEELLLL...................................
Query LLQN....NDNIVDXNFECENRPGP...................................  239
ident  |                                                          
Sbjct VLKYekdaFKREHLAEVTLSVKADFptpsisdfeiptsnirriicstsggfpephlswle  143
DSSP  EEEEelleEEEEEEEEEEEEEELLLllleeeeeellllleeeeeeeeeeellleeeeeel


DSSP  ...................................................lllll
Query ...................................................yefre  244
ident                                                         
Sbjct ngeelnainttvsqdpetelyavsskldfnmttnhsfmclikyghlrvnqtfnwnt  199
DSSP  llllllllleeeeelllllleeeeeeeeeellllleeeeeeeelleeelleeelll


No 12: 2J12B  MOLECULE: FIBER PROTEIN;                                             

DSSP  lllhhhhllleeeelllllllhhhlllleeellhhheelllllllllllllllllllllL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnpG   60
ident                                                             
Sbjct ...................................................slsittpeE    9
DSSP  ...................................................lleellleE


DSSP  LEEELLLLleeeleeeeeeelllllllllllhhhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident  |    |                                                     
Sbjct MIEKAKGE....................................................   17
DSSP  EEEELLLL....................................................


DSSP  llllhhhhhlLLLEELLLLEEHHHHhhhllllllLEEEEEEEL.......LEEEEEEEHH
Query glpwtiskgfDTFXPISAIVSREKFssyksnlqdIFRVKCSVN.......GQLRQDGGTN  173
ident               |     | |                            |        
Sbjct ..........TAYLPCKFTLSPEDQ........gPLDIEWLISpadnqkvDQVIILYSGD   59
DSSP  ..........LEEELLLEELLLLLL........lLEEEEEEELlllllllLEEEEEEELL


DSSP  HllllhhhhhhhhhllllllllleeellLLLLLE..........................
Query LxlhplhkilqhistxislepgdiiltgTPAGVG..........................  207
ident                                                             
Sbjct K...........................IYDDYYpdlkgrvhftsndlksgdasinvtnl   92
DSSP  E...........................EELLLLhhhllleeellllhhhlllleeelll


DSSP  eeLLLLEEEEEEEELleeEEEEEEEEEELllllllll
Query elKPGDRVHCELLQNndnIVDXNFECENRpgpyefre  244
ident          |                           
Sbjct qlSDIGTYQCKVKKA.pgVANKKIHLVVL........  120
DSSP  lhHHLEEEEEEEEEL.leEEEEEEEEEEL........


No 13: 2IF7A  MOLECULE: SLAM FAMILY MEMBER 6;                                      

DSSP  lllhhhhllleeeelllllllhhhlllleeellhhheelllllllllllllllllllllL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnpG   60
ident                                                             
Sbjct ........................................................ltpL    4
DSSP  ........................................................lllE


DSSP  LEEELlllleeeleeeeeeelllllllllllhhhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPrgvkvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident                                                             
Sbjct MVNGI.......................................................    9
DSSP  EEEEE.......................................................


DSSP  llllhhhhhlLLLEEL.LLLEEhhhhhhhlllllllEEEEEEELLEEEEEEEHhhLLLLH
Query glpwtiskgfDTFXPI.SAIVSrekfssyksnlqdiFRVKCSVNGQLRQDGGTnlXLHPL  179
ident                                            |                
Sbjct ........lgESVTLPlEFPAG...........ekvNFITWLFNETSLAFIVP..HETKS   48
DSSP  ........llLLEEELlLLLLL...........lllLEEEEEELLEEEEEEEL..LLLLL


DSSP  hhhhhhhhllllllllleeelLLLLLLE....................eeLLLLEEEEEE
Query hkilqhistxislepgdiiltGTPAGVG....................elKPGDRVHCEL  219
ident                                                             
Sbjct .....................PEIHVTNpkqgkrlnftqsyslqlsnlkmEDTGSYRAQI   87
DSSP  .....................LEEEELLhhhhlleeellllleeellllhHHLEEEEEEE


DSSP  EELLEEeEEEEEEEEELLLL.......................LLLL.............
Query LQNNDNiVDXNFECENRPGP.......................YEFR.............  243
ident                                                             
Sbjct STKTSA.KLSSYTLRILRQLrniqvtnhsqnmtcelhltcsveDADDnvsfrwealgntl  146
DSSP  ELLLLE.EEEEEEEEEELLLeeeeeeelllllleeeeeeeeeeLLLLlleeeeeelleee


DSSP  .........................................l
Query .........................................e  244
ident                                           
Sbjct ssqpnltvswdprisseqdytciaenavsnlsfsvsaqklce  188
DSSP  ellleeeeeelllllllleeeeeeeelleeeeeeeehhhhll


No 14: 1CN4A  MOLECULE: PROTEIN (ERYTHROPOIETIN RECEPTOR);                         

DSSP  lllhhhhllleeeelllllllhhhllLLEE...ELLHhheelllllllllllllllllll
Query synylkaarkiicigrnyaahikelqPFFF...LKPTssivtplsspanstfnglnedgt   57
ident                           |                                 
Sbjct ..........................PDPKfesKAAL.......................   11
DSSP  ..........................LLHHhhhHHHH.......................


DSSP  lllleeellllleeeleeeeeeelllllllllllhhhhhhheeeEEEEELLEEHhhhhhh
Query npgpifiprgvkvhheielalivskhlsnvtkxkpeevydsisgVALALDLTARnvqdea  117
ident                                               |             
Sbjct ......................................laargpEELLCFTERL......   27
DSSP  ......................................hhllllLLLEEELLLL......


DSSP  hhhllllhhhhhlllleelllleehhhhhhHLLLLL.LLEEEEEEEL.LEEEEEEEhhhl
Query kkkglpwtiskgfdtfxpisaivsrekfssYKSNLQ.DIFRVKCSVN.GQLRQDGGtnlx  175
ident                                                             
Sbjct ....................edlvcfweeaASAGVGpGQYSFSYQLEdEPWKLCRL....   63
DSSP  ....................llleeeeeelLLLLLLlLLEEEEEEELlLLLEEELL....


DSSP  lllhhHHHHHhhllllllllleeeLLLLLLL..EEELlLLEEEEEEEEL.LEEEEEEEEE
Query lhplhKILQHistxislepgdiilTGTPAGV..GELKpGDRVHCELLQN.NDNIVDXNFE  232
ident                                                             
Sbjct ..hqaPTARG............avRFWCSLPtaDTSS.FVPLELRVTAAsGAPRYHRVIH  108
DSSP  ..eeeELLLL............leEEEEELLhhHLLL.LLLEEEEEEELlLLLLLEEEEL


DSSP  ............................................................
Query ............................................................  232
ident                                                             
Sbjct inevvlldapvglvarladesghvvlrwlpppetpmtshiryevdvsagqgagsvqrvei  168
DSSP  lllleelllleeeelllllllllleeeeelllllllhhheeeeeeeellllllleeeeee


DSSP  ......................eeeLLLL...............lllll
Query ......................cenRPGP...............yefre  244
ident                             |                    
Sbjct legrtecvlsnlrgrtrytfavrarMAEPsfggfwsewsepvslltpsd  217
DSSP  llllleeelllllllleeeeeeeeeELLLllleellllllleeeellll


No 15: 2DRUA  MOLECULE: CHIMERA OF CD48 ANTIGEN AND T-CELL SURFACE                 

DSSP  lllhhhhllleeeelllllllhhhlllleeellhhheelllllllllllllllllllllL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnpG   60
ident                                                             
Sbjct .....................................................fqdqsvP    7
DSSP  .....................................................llllllL


DSSP  LEEELLLLLeeeleeeeeeelllllllllllhhhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVKvhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident       |                                                     
Sbjct NVNAITGSN...................................................   16
DSSP  EEEEELLLL...................................................


DSSP  llllhhhhhlllLEEL.LLLEehhhhhhhllllllLEEEEEEELL.EEEEEEEHHHLlll
Query glpwtiskgfdtFXPI.SAIVsrekfssyksnlqdIFRVKCSVNG.QLRQDGGTNLXlhp  178
ident                                      |        |       |     
Sbjct ............VTLTiLKHP...........lasYQRLTWLHTTnQKILEYFPNGK...   50
DSSP  ............EEELlLLLL...........lllLLEEEEELLLlLEEEEELLLLL...


DSSP  hhhhhhhhhllllllllleeelllLLLLE.....................eeLLLLEEEE
Query lhkilqhistxislepgdiiltgtPAGVG.....................elKPGDRVHC  217
ident                                                             
Sbjct ........................KTVFEsvfkdrvdldktngalriynvskEDRGDYYM   86
DSSP  ........................EEELLlllllleeelllllleeellllhHHLEEEEE


DSSP  EEEElLEEEeEEEEEEEELLLL......................................
Query ELLQnNDNIvDXNFECENRPGP......................................  239
ident   |             |                                           
Sbjct RMLH.ETED.QWKITMEVYEMVskpmiywecsnatltcevlegtdvelklyqgkehlrsl  144
DSSP  EEEL.LLEE.EEEEEEEEELLLllleeeeehhhleeeeellllllleeeeeelleeeeee


DSSP  ...............................lllll
Query ...............................yefre  244
ident                                     
Sbjct rqktmsyqwtnlrapfkckavnrvsqesemevvncp  180
DSSP  llleeeeellllllleeeeeeelleeeeeeelllll


No 16: 2GJ7E  MOLECULE: IG GAMMA-1 CHAIN C REGION;                                 

DSSP  lllhhhhllleeeelllllllhhhlllleeellhhheellllllllllllllllllllLL
Query synylkaarkiicigrnyaahikelqpffflkptssivtplsspanstfnglnedgtnPG   60
ident                                                           | 
Sbjct .................................................rgvtvrmetPE   11
DSSP  .................................................lleeeeeelLL


DSSP  LEEELLLLLEeeleeeeeeelllllllllllhhhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPRGVKVhheielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident  |    |                                                     
Sbjct AILFSPGETF..................................................   21
DSSP  EEELLLLLLE..................................................


DSSP  llllhhhhhlllLEELLLLEehhHHHHhLLLLllLEEEEEEEL.................
Query glpwtiskgfdtFXPISAIVsreKFSSyKSNLqdIFRVKCSVN.................  163
ident                 |                    |                      
Sbjct ............STNVSIHA...IAHD.DQTY..SMDVVWLRFdvptscaemriyescly   63
DSSP  ............ELLLEEEE...EELL.LLLE..EEEEEEEEElllllllleeeehhhhh


DSSP  ....................lEEEEEEEHHhllllhhhhhhhhhllllllllleeelllL
Query ....................gQLRQDGGTNlxlhplhkilqhistxislepgdiiltgtP  203
ident                                                             
Sbjct hpqlpeclspadapcaastwtSRLAVRSYA...............gcsrtnppprcsaeA  108
DSSP  llllhhhhllllhhheellllLLLEEEEEE...............eellllllllleeeE


DSSP  LLLEE..................ellLLEEEEEEEELLEEEEEEEEEEEELL....llll
Query AGVGE..................lkpGDRVHCELLQNNDNIVDXNFECENRP....gpye  241
ident                                |    |                       
Sbjct HMEPVpglawqaasvnlefrdaspqhSGLYLCVVYVNDHIHAWGHITISTAAqyrnavve  168
DSSP  EELLLlleeelllllleeellllhhhLEEEEEEEEELLEEEEEEEEEEELLLlllleeee


DSSP  lll
Query fre  244
ident    
Sbjct qpl  171
DSSP  lll


No 17: 1JMAA  MOLECULE: HERPESVIRUS ENTRY MEDIATOR;                                

DSSP  lllhhhhllleeeelllllllHHHL......................LLLEeellhhhee
Query synylkaarkiicigrnyaahIKEL......................QPFFflkptssiv   38
ident                                                             
Sbjct ....................kYALAdaslkmadpnrfrgkdlpvldqLTDP....pgvrr   36
DSSP  ....................lLLLLlhhhhlllllllllllllllleELLL....lllee


DSSP  lllllllllllllllllllllLLEEEL.LLLLEeeleeeeeeelllllllllllhhhhhh
Query tplsspanstfnglnedgtnpGPIFIP.RGVKVhheielalivskhlsnvtkxkpeevyd   97
ident                                 |                           
Sbjct vyhiqaglpdpfqppslpitvYYAVLErACRSV...........................   69
DSSP  elllllllllllllllllleeEEEEELlLLLEE...........................


DSSP  heeeeeeeelleehhhhhhhhhhllllhhhhhlllLEELLLL..EEHHHHHH.HLLLLLl
Query sisgvalaldltarnvqdeakkkglpwtiskgfdtFXPISAI..VSREKFSS.YKSNLQd  154
ident                                                   |         
Sbjct ...................................LLNAPSEapQIVRGASEdVRKQPY.   93
DSSP  ...................................EELLLLLhhHHHHLLLHhHHLLLE.


DSSP  LEEEEEEEL....LEEEEEEEHHhllllhhhhhhhhhllllllllleeelllLLLLEE..
Query IFRVKCSVN....GQLRQDGGTNlxlhplhkilqhistxislepgdiiltgtPAGVGE..  208
ident                                                     |       
Sbjct NLTIAWFRMggncAIPITVMEYT.............ecsynkslgacpirtqPRWNYYds  140
DSSP  EEEEEEEEEelleEEEEEEEEEE.............eelllllllllleeelLEELLLll


DSSP  .................ellLLEEEEEEEELLEEeEEEEEEEEELLLlLLLLL.......
Query .................lkpGDRVHCELLQNNDNiVDXNFECENRPGpYEFRE.......  244
ident                               |        |  | |               
Sbjct fsavsednlgflmhapafetAGTYLRLVKINDWT.EITQFILEHRAK.GSCKYalplrip  198
DSSP  leeelllllleeeelllhhhLEEEEEEEEELLEE.EEEEEEEEELLL.LLLLLlllllll


DSSP  ............................................................
Query ............................................................  244
ident                                                             
Sbjct psaclspqayqqgvtvdsigmlprfipenqrtvavyslkiagwhgpkapytstllppels  258
DSSP  hhhlllhhhhhlllllllllleelllhhhhhhhhhhhhhlllllllllleelllllhhhh


DSSP  .
Query .  244
ident  
Sbjct e  259
DSSP  l


No 18: 1BD9A  MOLECULE: PHOSPHATIDYLETHANOLAMINE BINDING PROTEIN;                  

DSSP  lllhhhhllleeeelllllllhhhlllleeellhHHEELLLllllllllllllllllllL
Query synylkaarkiicigrnyaahikelqpffflkptSSIVTPLsspanstfnglnedgtnpG   60
ident                                                             
Sbjct .........lskwsgplslqevdeqpqhplhvtyAGAAVDE................lgK   35
DSSP  .........lhhhhllllhhhlllllleeleeeeLLEEELL................llE


DSSP  LEEELllllEEELeeeeeeelllllllllllhhhhhhheeeeeeeelleehhhhhhhhhh
Query PIFIPrgvkVHHEielalivskhlsnvtkxkpeevydsisgvalaldltarnvqdeakkk  120
ident                                                             
Sbjct VLTPT..qvKNRP...............................................   46
DSSP  ELLLH..hhLLLL...............................................


DSSP  llllhhhhhlllleelLLLEEhhhhhhhllllLLLEEEEEEEL...........LEEEEE
Query glpwtiskgfdtfxpiSAIVSrekfssyksnlQDIFRVKCSVN...........GQLRQD  169
ident                                                             
Sbjct ..............tsISWDG........ldsGKLYTLVLTDPdapsrkdpkyrEWHHFL   84
DSSP  ..............leEELLL........lllLLEEEEEEEELlllllllllllLEEEEE


DSSP  EEHhhllllhhhhhhhhhllllllllleEELL..LLLLLEEELL.....LLEEEEEEEEL
Query GGTnlxlhplhkilqhistxislepgdiILTG..TPAGVGELKP.....GDRVHCELLQN  222
ident                                            |       |        
Sbjct VVN.....................mkgnDISSgtVLSDYVGSGPpkgtgLHRYVWLVYEQ  123
DSSP  EEE.....................eellLHHHleEEELLLLLLLlllllLEEEEEEEEEL


DSSP  .................................LEEEEEEEEEEEELL..lllllll
Query .................................NDNIVDXNFECENRP..gpyefre  244
ident                                             |            
Sbjct drplkcdepilsnrsgdhrgkfkvasfrkkyelRAPVAGTCYQAEWDDyvpklyeql  180
DSSP  lllllllllllllllllllllllhhhhhhhlllLLLLEEEEEEELLLLlhhhhhhhl