DaliLite: Structural Neighbours

Query: 1LW5B MOLECULE: L-ALLO-THREONINE ALDOLASE;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  2FM1-A 57.5  0.7  343   343   96   L-ALLO-THREONINE ALDOLASE;                                 "         
-

No 1: 2FM1A  MOLECULE: L-ALLO-THREONINE ALDOLASE;                                 

DSSP  LEELLLHHHLLLLHHHHHHHHLLLLLLHHHLLLHHHHHHHHHHHHHHLLLEEEEELLHHH
Query XIDLRSDTVTKPTEEXRKAXAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTX   60
ident  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct MIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTM   60
DSSP  LEELLLHHHLLLLHHHHHHHHLLLLLLHHHLLLHHHHHHHHHHHHHHLLLEEEEELLHHH


DSSP  HHHHHHHHHLLLLLEEEEELLLHHHHLLLLHHHHHHLLEEEEELLLLLLLLHHHHHHHLL
Query GNQVSIXAHTQRGDEVILEADSHIFWYEVGAXAVLSGVXPHPVPGKNGAXDPDDVRKAIR  120
ident |||||| |||||||||||||||||||||||| |||||| |||||||||| ||||||||||
Sbjct GNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIR  120
DSSP  HHHHHHHHHLLLLLEEEEELLLHHHHLLLLHHHHHHLLEEEEELEELLEELHHHHHHHLL


DSSP  LLLLLLLLEEEEEEELLLLLLLLLLLLHHHHHHHHHHHHHHLLEEEEELLLHHHHHHHHL
Query PRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG  180
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct PRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG  180
DSSP  LLLLLLLLEEEEEEELLLLLLLLLLLLHHHHHHHHHHHHHHLLEEEEELLLHHHHHHHHL


DSSP  LLHHHHHHLLLEEEEELLLLLLLLLLEEEEELHHHHHHHHHHHHHHLLLLLLLHHHHHHH
Query VPVKEYAGYADSVXFCLSXGLCAPVGSVVVGDRDFIERARKARKXLGGGXRQAGVLAAAG  240
ident ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct VPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAG  240
DSSP  LLHHHHHLLLLEEEEELLLLLLLLLLEEEEELHHHHHHHHHHHHHHLLLLLLLHHHHHHH


DSSP  HHHHHHLLLLHHHHHHHHHHHHHHHHHHLLEELHHHLLLLEEEEELLLLLLLHHHHHHHH
Query IIALTKXVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNXVILRTDNLKVNAHGFIEAL  300
ident |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct IIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEAL  300
DSSP  HHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLLLHHHLLLLEEEEELLLLLLLHHHHHHHH


DSSP  HHLLEELEELLLLEEEEELLLLLLHHHHHHHHHHHHHHHHHHL
Query RNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS  343
ident |||||||||||||||||||||||||||||||||||||||||||
Sbjct RNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS  343
DSSP  HHLLEELEEEELLEEEEELLLLLLHHHHHHHHHHHHHHHHHHL