DaliLite: Structural Neighbours

Query: 1JFIA MOLECULE: TRANSCRIPTION REGULATOR NC2 ALPHA CHAIN;

The output is truncated at max 100 structural neighbours. Matches are sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.

Summary

Notation:

Chain: PDB entry code plus chain identifier
Z: normalized Z-score that depends on the size of the structures. The program optimises a weighted sum of similarities of intramolecular distances.
rmsd: root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. The program does not optimise rmsd, this is only reported for your information.
lali: number of structurally equivalent residues
nres: number of amino acids in the protein
%id: percentage of identical amino acids over all structurally equivalent residues
Description: the COMPND record from the PDB entry

  No:  Chain   Z    rmsd lali nres  %id  Description
   1:  1JFI-A 12.0  0.0   63    63  100   TRANSCRIPTION REGULATOR NC2 ALPHA CHAIN;                   "         
   2:  1TAF-B  7.5  1.4   62    69    8   TFIID TBP ASSOCIATED FACTOR 42;                            "         
   3:  2ARO-D  6.6  1.5   61    83   15   HISTONE H2A-IV;                                            "         
   4:  1H3O-A  4.9  1.8   45    49   18   TRANSCRIPTION INITIATION FACTOR TFIID 135 KDA              "         
   5:  1USD-A  2.5  4.8   35    41    3   VASODILATOR-STIMULATED PHOSPHOPROTEIN;                     "         
   6:  1CXZ-B  2.3  4.2   49    86    8   PROTEIN (HIS-TAGGED TRANSFORMING PROTEIN RHOA(0-           "         
   7:  1BB1-A  2.3  2.8   32    34    6   DESIGNED, THERMOSTABLE HETEROTRIMERIC COILED               "         
   8:  1JB0-M  2.2  1.6   31    31    3   PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1;            "         
   9:  1T6A-A  2.1  3.3   38   124    5   RBSTP2229 GENE PRODUCT;                                    "         
  10:  2FYZ-B  2.0  3.0   31    32   10   FUSION GLYCOPROTEIN F0;                                    "         
-

No 1: 1JFIA  MOLECULE: TRANSCRIPTION REGULATOR NC2 ALPHA CHAIN;                   

DSSP  LLLLHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHL
Query ARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRTMTTSHLKQ   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct ARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRTMTTSHLKQ   60
DSSP  LLLLHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHL


DSSP  LLL
Query CIE   63
ident |||
Sbjct CIE   63
DSSP  LLL


No 2: 1TAFB  MOLECULE: TFIID TBP ASSOCIATED FACTOR 42;                            

DSSP  ....LLLLHHHHHHHHLLLLlLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLL...LL
Query ....ARFPPARIKKIMQTDEeIGKVAAAVPVIISRALELFLESLLKKACQVTQSR...TM   53
ident             | |       |                 |      |            
Sbjct mlygSSISAESMKVIAESIG.VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAkrqKL   59
DSSP  llllLLLLHHHHHHHHHHLL.LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLlllLL


DSSP  LHHHHHLLLL
Query TTSHLKQCIE   63
ident           
Sbjct SVRDIDMSLK   69
DSSP  LHHHHHHHHL


No 3: 2AROD  MOLECULE: HISTONE H2A-IV;                                            

DSSP  .......lLLLHHHHHHHHLLLLlLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLL..
Query .......aRFPPARIKKIMQTDEeIGKVAAAVPVIISRALELFLESLLKKACQVTQSR..   51
ident               |                        |  |||     |   |     
Sbjct kvlrdniqGITKPAIRRLARRGG.VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAkr   59
DSSP  lllllhhhHLLHHHHHHHHHHLL.LLEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHLll


DSSP  .LLLHHHHHLLLL...........
Query .TMTTSHLKQCIE...........   63
ident  | |                    
Sbjct kTVTAMDVVYALKrqgrtlygfgg   83
DSSP  lEELHHHHHHHHHhllleeellll


No 4: 1H3OA  MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID 135 KDA              

DSSP  lLLLHHHHHHHHL.LLLL..LLLLLLLHHHHHHHHHHHHHHHHHHHHHHhhhlllllhhh
Query aRFPPARIKKIMQ.TDEE..IGKVAAAVPVIISRALELFLESLLKKACQvtqsrtmttsh   57
ident      |              |      |    | |    |  |  |              
Sbjct xFLLQAPLQRRILeIGKKhgITELHPDVVSYVSHATQQRLQNLVEKISE...........   49
DSSP  lLLLHHHHHHHHHhHHHLllLLEELLLHHHHHHHHHHHHHHHHHHHHHL...........


DSSP  hhllll
Query lkqcie   63
ident       
Sbjct ......   49
DSSP  ......


No 5: 1USDA  MOLECULE: VASODILATOR-STIMULATED PHOSPHOPROTEIN;                     

DSSP  llllhhhhhhhhllllLLLL..LLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLlllhhhh
Query arfpparikkimqtdeEIGK..VAAAVPVIISRALELFLESLLKKACQVTQSRtmttshl   58
ident                                                   |         
Sbjct ................SSDYsdLQRVKQELMEEVKKELQKVKEEIIEAFVQEL.......   37
DSSP  ................LLLHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......


DSSP  hllll
Query kqcie   63
ident      
Sbjct .rkrg   41
DSSP  .hhhl


No 6: 1CXZB  MOLECULE: PROTEIN (HIS-TAGGED TRANSFORMING PROTEIN RHOA(0-           

DSSP  llllhhhhhHHHL.LLLLL.......lLLLL.LHHHHHHHHHHHHHHHHHHHHHHHHHLL
Query arfpparikKIMQ.TDEEI.......gKVAA.AVPVIISRALELFLESLLKKACQVTQSR   51
ident                                        |        |   |       
Sbjct .........WSLLeQLGLAgadlaapgVQQQlELERERLRREIRKELKLKEGAENLRRAT   51
DSSP  .........LLHHhHLLLLllllllhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH


DSSP  ........LLLHhhHHLL................ll
Query ........TMTTshLKQC................ie   63
ident               |                     
Sbjct tdlgrslgPVEL.lLRGSsrrldllhqqlqelhahv   86
DSSP  hhhllllhHHHH.hHHHHhhhhhhhhhhhhhhhlll


No 7: 1BB1A  MOLECULE: DESIGNED, THERMOSTABLE HETEROTRIMERIC COILED               

DSSP  llllhhhhhhhhllllllLLLLL.LHHHHHHHHHHHHHHHHHHHHHHHHHLllllhhhhh
Query arfpparikkimqtdeeiGKVAA.AVPVIISRALELFLESLLKKACQVTQSrtmttshlk   59
ident                      |       |                              
Sbjct .................aEIAAIeYEQAAIKEEIAAIKDKIAAIKEYIAAI.........   34
DSSP  .................lHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHL.........


DSSP  llll
Query qcie   63
ident     
Sbjct ....   34
DSSP  ....


No 8: 1JB0M  MOLECULE: PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1;            

DSSP  llllhhhhhhhhllllllLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHlllllhhhhhl
Query arfpparikkimqtdeeiGKVAAAVPVIISRALELFLESLLKKACQVTQsrtmttshlkq   60
ident                                   |                         
Sbjct ..................MALTDTQVYVALVIALLPAVLAFRLSTELYK...........   31
DSSP  ..................LLLLHHHHHHHHHHHHHHHHHHHHHHHHHLL...........


DSSP  lll
Query cie   63
ident    
Sbjct ...   31
DSSP  ...


No 9: 1T6AA  MOLECULE: RBSTP2229 GENE PRODUCT;                                    

DSSP  llllhhhhhhhhlLLLL.LLLL..LLLHHHHHHHHHHHHHHHHHHHHHHHHHLL......
Query arfpparikkimqTDEE.IGKV..AAAVPVIISRALELFLESLLKKACQVTQSR......   51
ident                                            |  |             
Sbjct .......axntdlKLPAgKTXTieDVKQLLERYQXALKKTGEQLGWAYEQAAFPytvrih   53
DSSP  .......llllllLLLLlLLLLhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLeeeeee


DSSP  ...........................................................l
Query ...........................................................t   52
ident                                                             
Sbjct esvlylqgdgrlykgxaisvrtageetfidialppgathgdkgkanefskwlaktlggel  113
DSSP  lleeeeeelllllleeeeeeeeelleeeeeeellllllhhhhhhhhhhhhhhhhhhleee


DSSP  llhhhhhllll
Query mttshlkqcie   63
ident            
Sbjct hlfsgrtxvfg  124
DSSP  ellllleeeel


No 10: 2FYZB  MOLECULE: FUSION GLYCOPROTEIN F0;                                    

DSSP  llllhhhhhhhhlllllllLLLL.LHHHHHHHHHHHHHHHHHHHHHHhHHLLlllhhhhh
Query arfpparikkimqtdeeigKVAA.AVPVIISRALELFLESLLKKACQvTQSRtmttshlk   59
ident                            |  |               |             
Sbjct ...................DISTeLSKVNASLQNTVKYIKESNHQLQ.SVIV........   32
DSSP  ...................LHHHhHHHHHHHHHHHHHHHHHHHHHHL.LLLL........


DSSP  llll
Query qcie   63
ident     
Sbjct ....   32
DSSP  ....